Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0300.Seq
         (595 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               153   1e-37
SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 33   0.23 
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     29   3.7  
SB_49378| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  153 bits (371), Expect = 1e-37
 Identities = 80/104 (76%), Positives = 84/104 (80%), Gaps = 1/104 (0%)
 Frame = -3

Query: 551 QAIYVPADDL-QILLRYHFCSLGCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 375
           QAIYVPADDL        F  L     LSR IAELGIYPAVDPLDSTSRIMDPNI+G EH
Sbjct: 278 QAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMDPNIVGTEH 337

Query: 374 YNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFR 243
           Y +ARGVQKILQDYKSLQDIIAILGMDELSE+DKLTVARA K +
Sbjct: 338 YEIARGVQKILQDYKSLQDIIAILGMDELSEDDKLTVARARKIQ 381



 Score =  114 bits (274), Expect = 6e-26
 Identities = 53/67 (79%), Positives = 59/67 (88%)
 Frame = -2

Query: 252 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVA 73
           KIQ+FLSQPF  AEVFTGH GKLVPL+ETI GF+KIL G+ DHLPEVAFYM+GPIEE VA
Sbjct: 379 KIQKFLSQPFVTAEVFTGHDGKLVPLKETIVGFNKILKGELDHLPEVAFYMIGPIEEAVA 438

Query: 72  KADTLAK 52
           KAD LA+
Sbjct: 439 KADRLAE 445


>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
 Frame = -3

Query: 356 VQKILQDYKSLQDIIAILGMDELSEEDKLT--VARAVK 249
           V++ILQ+ + L +I+ ++G   L+E DK+T  VA+ +K
Sbjct: 337 VKEILQEEEDLSEIVQLVGKGSLAESDKITLEVAKLIK 374


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -3

Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
           + R +    IYP ++ L S SR+M   I       +H +V+  +       K +Q + A+
Sbjct: 297 VDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAV 356

Query: 305 LGMDELSEEDKLTVARAVKF 246
           +G + L+ ED L +    KF
Sbjct: 357 VGEEALTSEDLLYLEFLTKF 376


>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
 Frame = -1

Query: 595 IRKNYHHQEGSITSDRLFMYQLM------TCRSCSATTFAHLDATTDSPEP---LLNWVS 443
           + + +H    ++  D+  MY L       + + C+AT F   D T         ++N +S
Sbjct: 112 LEQGWHQLNNTLLQDKT-MYALTRHETDYSIKHCNATEFCPNDRTASMGSHDAFIVNLIS 170

Query: 442 TQLWILLTQLPVSWTPILLELSTTMLHVEFRKF-FRTTNPCRTLLLF 305
                +L Q+ +   P    +   ++++ FRK+ F+  NPCR L +F
Sbjct: 171 PLPEAMLKQMEILKLPYG-GMEQVLIYL-FRKYGFKVKNPCRILRIF 215


>SB_49378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 496 AHLDATTDSPEPLLNW-VSTQLWIL 425
           AHL  T+  P PL+ W V   LW+L
Sbjct: 15  AHLSGTSVQPMPLVGWGVQEPLWLL 39


>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 449 GIYPAVDPLDSTSRIMDPNIIGAEHY 372
           G YPA DP     R   PNI  A HY
Sbjct: 212 GDYPAWDPTTDYQRNSRPNIANAFHY 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,440
Number of Sequences: 59808
Number of extensions: 379157
Number of successful extensions: 1120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)