Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0300.Seq
(595 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 148 3e-36
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 31 0.47
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 30 1.1
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 30 1.1
U80839-8|AAB37914.1| 238|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z92973-6|CAI79258.1| 440|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF125963-2|AAD14743.1| 463|Caenorhabditis elegans Hypothetical ... 27 7.6
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 148 bits (359), Expect = 3e-36
Identities = 77/104 (74%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = -3
Query: 551 QAIYVPADDL-QILLRYHFCSLGCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 375
QAIYVPADDL F L LSR IAEL IYPAVDPLDSTSRIMDPN++G H
Sbjct: 367 QAIYVPADDLTDPAPATTFAHLDATTVLSRGIAELAIYPAVDPLDSTSRIMDPNVVGQNH 426
Query: 374 YNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFR 243
Y++ARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV+RA K +
Sbjct: 427 YDIARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVSRARKIQ 470
Score = 105 bits (253), Expect = 2e-23
Identities = 50/67 (74%), Positives = 56/67 (83%)
Frame = -2
Query: 252 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVA 73
KIQRFLSQPFQVAEVFTGH GK V LEETI+GF+ IL G+ DHLPEVAFYM G I++V
Sbjct: 468 KIQRFLSQPFQVAEVFTGHQGKFVSLEETIRGFTMILKGELDHLPEVAFYMQGGIDDVFK 527
Query: 72 KADTLAK 52
KA+ LAK
Sbjct: 528 KAEELAK 534
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = -3
Query: 446 IYPAVDPLDSTSRIM----DPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEE 279
IYP +D L S SR+M + +H +++ + K +Q + A++G++ LS +
Sbjct: 380 IYPPIDVLPSLSRLMKSAVGEGMTREDHSDLSNQLYACYAMGKDVQAMKAVVGVEALSPD 439
Query: 278 DKLTVARAVKF 246
D L + KF
Sbjct: 440 DLLYLEFLAKF 450
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -3
Query: 446 IYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEE 279
IYP ++ L S SR+M I +H +V+ + K +Q + A++G + LS +
Sbjct: 368 IYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSD 427
Query: 278 DKLTVARAVKF 246
D L + KF
Sbjct: 428 DLLYLEFLTKF 438
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = -3
Query: 353 QKILQDYKSLQDIIAILGMDELSEEDKLT--VARAVK 249
++ILQ+ + L +I+ ++G L+E DK+T VA+ +K
Sbjct: 469 KEILQEEEDLSEIVQLVGKASLAESDKVTLEVAKIIK 505
>U80839-8|AAB37914.1| 238|Caenorhabditis elegans Hypothetical
protein ZC204.10 protein.
Length = 238
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = -1
Query: 493 HLDATTDSPEPLLNWVSTQLWILLTQLPVSWTPILLELSTTMLHVEFRKFFRTTNPCRTL 314
H+D+T PLLN+ S+ + ++++ VS I+ + + LHV + ++N L
Sbjct: 151 HIDSTEMEDVPLLNFFSSVELLSVSEIRVSDFIIIQNVRSLELHVVNLDYILSSNSSDIL 210
Query: 313 LLFWVWTSCLKKTS*QW 263
L ++ L QW
Sbjct: 211 LYCFLSNKDLNLLMKQW 227
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 545 IYVPADDLQILLRYHFCSLGC 483
+Y AD + L YH CSLGC
Sbjct: 317 LYYKADRKPVTLTYHNCSLGC 337
>Z92973-6|CAI79258.1| 440|Caenorhabditis elegans Hypothetical
protein Y6G8.5 protein.
Length = 440
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 545 IYVPADDLQILLRYHFCSLGC 483
+Y D + L YH CSLGC
Sbjct: 27 LYYKTDQKPVTLTYHNCSLGC 47
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 351 ENSSGLQIPAGHYCYFG 301
ENS+G + AGH+C+ G
Sbjct: 424 ENSNGTECSAGHWCHIG 440
>AF125963-2|AAD14743.1| 463|Caenorhabditis elegans Hypothetical
protein Y38A10A.2 protein.
Length = 463
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 146 ILENPLIVSSSGTSLPACPVNTSATWKGCERNL*ILLHVP 265
+ +N L+V S +P S T K ERN +L H+P
Sbjct: 200 VFKNTLVVVVSAEGIPVGTFGNSYTGKVEERNPILLAHIP 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,012,888
Number of Sequences: 27780
Number of extensions: 293041
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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