Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0300.Seq
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   6.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 490 LDATTDSPEPLLNWVSTQLWILLTQLPVSWT-PILLELSTTMLHV 359
           L +T  +P   L W+   L++L   LP+  +  ++L  ST  ++V
Sbjct: 122 LKSTEVTPRDGLGWLLLMLYLLFATLPLRLSFCVVLACSTATVYV 166


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 195 HVQ*TPQLLGKVVRGTSEFYC 257
           HV+ TP LL   + G +EF C
Sbjct: 332 HVEVTPPLLSVHLGGNAEFRC 352


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 195 HVQ*TPQLLGKVVRGTSEFYC 257
           HV+ TP LL   + G +EF C
Sbjct: 332 HVEVTPPLLSVHLGGNAEFRC 352


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 240 TSEFYCTCHCQLVFFRQLVHTQNSNNVLQGFVVLKNFLNSTCNIVVLS 383
           TS       C LV F     ++N N       V KNF N  C  + L+
Sbjct: 75  TSYHRINLKCSLVEF-----SENKNCNAGSLTVKKNFANKYCGNITLN 117


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 266 LSTCLLQTTRPYP 304
           L  CLL+T R YP
Sbjct: 400 LERCLLETLRMYP 412


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 336 VLKNFLNSTCNI 371
           +++N LNSTC++
Sbjct: 340 IVRNHLNSTCSV 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,423
Number of Sequences: 438
Number of extensions: 3595
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)