Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0300.Seq
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 141 3e-34
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 141 3e-34
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 141 3e-34
At3g50150.1 68416.m05482 expressed protein contains Pfam profile... 33 0.14
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 33 0.19
At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing prote... 31 0.77
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 30 1.0
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 30 1.0
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 30 1.0
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 30 1.0
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (... 30 1.3
At3g11560.3 68416.m01412 expressed protein 29 3.1
At3g11560.2 68416.m01411 expressed protein 29 3.1
At3g11560.1 68416.m01410 expressed protein 29 3.1
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-... 27 7.1
At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protei... 27 9.4
At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protei... 27 9.4
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 141 bits (342), Expect = 3e-34
Identities = 73/104 (70%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = -3
Query: 551 QAIYVPADDL-QILLRYHFCSLGCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 375
QAIYVPADDL F L LSR I+ELGIYPAVDPLDSTSR++ P+I+G EH
Sbjct: 385 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 444
Query: 374 YNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFR 243
YN ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTVARA K +
Sbjct: 445 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQ 488
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = -2
Query: 252 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVA 73
KIQRFLSQPF VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVA
Sbjct: 486 KIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVA 545
Query: 72 KADTLAKNA 46
KA+ +AK +
Sbjct: 546 KAEKIAKES 554
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 141 bits (342), Expect = 3e-34
Identities = 73/104 (70%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = -3
Query: 551 QAIYVPADDL-QILLRYHFCSLGCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 375
QAIYVPADDL F L LSR I+ELGIYPAVDPLDSTSR++ P+I+G EH
Sbjct: 388 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 447
Query: 374 YNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFR 243
YN ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTVARA K +
Sbjct: 448 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQ 491
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = -2
Query: 252 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVA 73
KIQRFLSQPF VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVA
Sbjct: 489 KIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVA 548
Query: 72 KADTLAKNA 46
KA+ +AK +
Sbjct: 549 KAEKIAKES 557
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 141 bits (342), Expect = 3e-34
Identities = 73/104 (70%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
Frame = -3
Query: 551 QAIYVPADDL-QILLRYHFCSLGCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 375
QAIYVPADDL F L LSR I+ELGIYPAVDPLDSTSR++ P+I+G EH
Sbjct: 385 QAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEH 444
Query: 374 YNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFR 243
YN ARGVQK+LQ+YK+LQDIIAILGMDELSE+DKLTVARA K +
Sbjct: 445 YNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQ 488
Score = 89.0 bits (211), Expect = 2e-18
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = -2
Query: 252 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVA 73
KIQRFLSQPF VAE+FTG GK V L+E I F +L G YD L E +FYMVG I+EVVA
Sbjct: 486 KIQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKYDDLSEQSFYMVGGIDEVVA 545
Query: 72 KADTLAKNA 46
KA+ +AK +
Sbjct: 546 KAEKIAKES 554
>At3g50150.1 68416.m05482 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function; expression
supported by MPSS
Length = 509
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/48 (35%), Positives = 27/48 (56%)
Frame = +3
Query: 273 LVFFRQLVHTQNSNNVLQGFVVLKNFLNSTCNIVVLSSNNIGVHDTGS 416
L+ F Q HTQ+SNN+ + + N +NS+ ++ L + I H GS
Sbjct: 377 LIAFEQC-HTQSSNNITSYIIFMDNLINSSQDVSYLHHDGIIEHWLGS 423
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -3
Query: 425 LDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKF 246
L+S DP+ I N+ +++LQ L +I+ ++G D L+E DK+T+ A
Sbjct: 464 LESFYEKFDPDFI-----NIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLL 518
Query: 245 R 243
R
Sbjct: 519 R 519
>At2g24820.1 68415.m02969 Rieske [2Fe-2S] domain-containing protein
similar to Rieske iron-sulfur protein Tic55 from Pisum
sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 539
Score = 30.7 bits (66), Expect = 0.77
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = +3
Query: 279 FFRQLVHTQNSNNVLQGFVVLKNFLNST 362
+FR ++H ++ +NV++ F + KN L++T
Sbjct: 460 YFRHIIHCRSCSNVIKSFELWKNILSAT 487
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 356 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 415
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS ED L + KF
Sbjct: 416 VGEEALSSEDLLYLEFLDKF 435
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 356 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 415
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS ED L + KF
Sbjct: 416 VGEEALSSEDLLYLEFLDKF 435
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 355 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAV 414
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS ED L + KF
Sbjct: 415 VGEEALSSEDLLYLEFLDKF 434
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 354 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAV 413
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS ED L + KF
Sbjct: 414 VGEEALSSEDLLYLEFLDKF 433
>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (CKI1)
identical to GB:D87545
Length = 1122
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -3
Query: 437 AVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTV 264
+VD L MD + + Y R ++K+ + Y IIA+ G D SEE + T+
Sbjct: 1038 SVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI 1095
>At3g11560.3 68416.m01412 expressed protein
Length = 872
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 LENPLIVSSSGTSLPACPVNTSATWKGCERNL*ILLHVP-LSTCL 280
L+ P +VSSS TS P P + T+ C+R +H+ LS CL
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRT----VHLEYLSNCL 45
>At3g11560.2 68416.m01411 expressed protein
Length = 872
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 LENPLIVSSSGTSLPACPVNTSATWKGCERNL*ILLHVP-LSTCL 280
L+ P +VSSS TS P P + T+ C+R +H+ LS CL
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRT----VHLEYLSNCL 45
>At3g11560.1 68416.m01410 expressed protein
Length = 619
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 149 LENPLIVSSSGTSLPACPVNTSATWKGCERNL*ILLHVP-LSTCL 280
L+ P +VSSS TS P P + T+ C+R +H+ LS CL
Sbjct: 5 LQRPGLVSSSSTSKPCLPRMSIVTFISCKRT----VHLEYLSNCL 45
>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
factor-related similar to CCAAT-box-binding
transcription factor (CCAAT-binding factor) (CBF)
(Swiss-Prot:Q03701) [Homo sapiens], GB:P53569 [Mus
musculus]
Length = 1056
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 319 TLLLFWVWTSCLKK 278
+LLLFW W CLK+
Sbjct: 303 SLLLFWYWEDCLKQ 316
>At2g27450.2 68415.m03318 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 326
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = -2
Query: 210 VFTGHAG-KLVPLEETIKGFSKILAGDYDHLP-EVAFY----MVGPIEEVVAKAD 64
V GHAG +VPL + + +I+ + +H P ++ FY + GP E+VA+AD
Sbjct: 230 VMQGHAGANVVPLVASNRIGKEII--ETEHGPSQITFYGTSFIAGPTGEIVAEAD 282
>At2g27450.1 68415.m03317 carbon-nitrogen hydrolase family protein
low similarity to beta-alanine synthase [Drosophila
melanogaster] GI:14334063; contains Pfam profile
PF00795: hydrolase, carbon-nitrogen family
Length = 299
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 6/55 (10%)
Frame = -2
Query: 210 VFTGHAG-KLVPLEETIKGFSKILAGDYDHLP-EVAFY----MVGPIEEVVAKAD 64
V GHAG +VPL + + +I+ + +H P ++ FY + GP E+VA+AD
Sbjct: 203 VMQGHAGANVVPLVASNRIGKEII--ETEHGPSQITFYGTSFIAGPTGEIVAEAD 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,263,640
Number of Sequences: 28952
Number of extensions: 274007
Number of successful extensions: 641
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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