Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0299.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8XAZ4 Cluster: Uncharacterized protein yneF; n=24; Ent... 84 3e-15
UniRef50_Q6D9G9 Cluster: Altronate oxidoreductase; n=45; Gammapr... 82 8e-15
UniRef50_O34354 Cluster: Altronate oxidoreductase; n=2; Bacillus... 60 3e-08
UniRef50_Q97L67 Cluster: Altronate oxidoreductase; n=2; Bacteria... 58 1e-07
UniRef50_Q8A9J0 Cluster: Altronate oxidoreductase; n=5; Bacteroi... 58 2e-07
UniRef50_Q2B7Q1 Cluster: Tagaturonate reductase; n=3; Firmicutes... 54 3e-06
UniRef50_A6PMI1 Cluster: Mannitol dehydrogenase, C-terminal doma... 53 4e-06
UniRef50_Q9KFI7 Cluster: Altronate oxidoreductase; n=1; Bacillus... 52 1e-05
UniRef50_A0M230 Cluster: Altronate oxidoreductase; n=1; Gramella... 52 1e-05
UniRef50_Q5WKX0 Cluster: Altronate oxidoreductase; n=1; Bacillus... 51 2e-05
UniRef50_A1HM18 Cluster: Mannitol dehydrogenase, C-terminal doma... 50 4e-05
UniRef50_A7AYR9 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_Q3Y3F7 Cluster: Mannitol dehydrogenase; n=1; Enterococc... 46 9e-04
UniRef50_Q1FGP6 Cluster: Mannitol dehydrogenase; n=1; Clostridiu... 45 0.001
UniRef50_A4E8T4 Cluster: Putative uncharacterized protein; n=1; ... 43 0.005
UniRef50_Q5WIW3 Cluster: Altronate oxidoreductase; n=1; Bacillus... 43 0.006
UniRef50_A5FC00 Cluster: Mannitol dehydrogenase, C-terminal doma... 42 0.015
UniRef50_A3HWR4 Cluster: Tagaturonate reductase; n=1; Algoriphag... 41 0.019
UniRef50_Q5QV72 Cluster: Intracellular signaling protein; n=2; I... 38 0.14
UniRef50_Q1MBP1 Cluster: Putative transmembrane sensory box GGDE... 38 0.14
UniRef50_A0G250 Cluster: Diguanylate cyclase; n=1; Burkholderia ... 37 0.41
UniRef50_Q2W154 Cluster: Putative uncharacterized protein; n=2; ... 36 0.72
UniRef50_A5NQ24 Cluster: Diguanylate cyclase; n=1; Methylobacter... 36 0.72
UniRef50_Q3IKK3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.96
UniRef50_Q2W9E2 Cluster: Predicted signal transduction protein; ... 36 0.96
UniRef50_Q9HZX6 Cluster: Putative uncharacterized protein; n=6; ... 35 1.3
UniRef50_Q3SFL9 Cluster: Putative diguanylate cyclase; n=1; Thio... 35 1.7
UniRef50_A0NV57 Cluster: Putative diguanylate cyclase/phosphodie... 35 1.7
UniRef50_Q5QUQ3 Cluster: Intracellular signaling protein; n=2; I... 34 2.2
UniRef50_Q47FH1 Cluster: PAS:GGDEF; n=1; Dechloromonas aromatica... 34 2.2
UniRef50_A6PC93 Cluster: Diguanylate cyclase precursor; n=1; She... 34 2.2
UniRef50_A0XI66 Cluster: Diguanylate cyclase; n=2; Desulfuromona... 34 2.2
UniRef50_A6GTR0 Cluster: GGDEF domain; n=1; Limnobacter sp. MED1... 34 2.9
UniRef50_A6CIA7 Cluster: YhcK; n=1; Bacillus sp. SG-1|Rep: YhcK ... 34 2.9
UniRef50_A5V5W5 Cluster: Diguanylate cyclase precursor; n=1; Sph... 34 2.9
UniRef50_A3YBR1 Cluster: Diguanylate cyclase; n=1; Marinomonas s... 34 2.9
UniRef50_UPI0000E11028 Cluster: diguanylate cyclase (GGDEF domai... 33 3.9
UniRef50_Q89M46 Cluster: Bll4347 protein; n=11; Bradyrhizobiacea... 33 3.9
UniRef50_Q41DL7 Cluster: GGDEF; n=1; Exiguobacterium sibiricum 2... 33 3.9
UniRef50_Q0HX74 Cluster: Diguanylate cyclase precursor; n=11; Sh... 33 3.9
UniRef50_A6WAS9 Cluster: Diguanylate cyclase; n=1; Kineococcus r... 33 3.9
UniRef50_Q8UFY7 Cluster: GGDEF family protein; n=2; Agrobacteriu... 33 5.1
UniRef50_Q748N2 Cluster: Sensory box/GGDEF family protein; n=4; ... 33 5.1
UniRef50_Q317L8 Cluster: Diguanylate cyclase (GGDEF domain) prec... 33 5.1
UniRef50_Q2KZ95 Cluster: Putative signaling membrane protein; n=... 33 5.1
UniRef50_A4ABI7 Cluster: Sensory box/GGDEF family protein; n=1; ... 33 5.1
UniRef50_A1K9E0 Cluster: GGDEF/PAS/PAC-domain containing protein... 33 5.1
UniRef50_Q9KRN7 Cluster: GGDEF family protein; n=18; Vibrio chol... 33 6.7
UniRef50_Q5H2X7 Cluster: Response regulator; n=9; Xanthomonas|Re... 33 6.7
UniRef50_Q3A1R9 Cluster: GGDEF domain containing protein; n=1; P... 33 6.7
UniRef50_A6V917 Cluster: Membrane protein, putative; n=7; Pseudo... 33 6.7
UniRef50_A5V9I8 Cluster: Diguanylate cyclase; n=1; Sphingomonas ... 33 6.7
UniRef50_A5FPU8 Cluster: Diguanylate cyclase and metal dependent... 33 6.7
UniRef50_A1W8G6 Cluster: Diguanylate cyclase/phosphodiesterase w... 33 6.7
UniRef50_A1ASG6 Cluster: Diguanylate cyclase with PAS/PAC sensor... 33 6.7
UniRef50_A0Y3B7 Cluster: Response regulator containing a CheY-li... 33 6.7
UniRef50_Q1GYK0 Cluster: Diguanylate cyclase/phosphodiesterase; ... 32 8.9
UniRef50_A2SDI4 Cluster: Signal transduction protein; n=1; Methy... 32 8.9
UniRef50_A0L7S5 Cluster: Response regulator receiver modulated d... 32 8.9
>UniRef50_Q8XAZ4 Cluster: Uncharacterized protein yneF; n=24;
Enterobacteriaceae|Rep: Uncharacterized protein yneF -
Escherichia coli O157:H7
Length = 315
Score = 83.8 bits (198), Expect = 3e-15
Identities = 38/38 (100%), Positives = 38/38 (100%)
Frame = -2
Query: 465 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 352
TLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV
Sbjct: 278 TLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 315
Score = 41.5 bits (93), Expect = 0.015
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -1
Query: 568 KKXRKGVELQPFTWXQKTLY 509
+K RKGVELQPFTW QKTLY
Sbjct: 243 EKIRKGVELQPFTWQQKTLY 262
Score = 38.3 bits (85), Expect = 0.14
Identities = 23/42 (54%), Positives = 23/42 (54%)
Frame = -3
Query: 596 NPCDGLLMAEKXP*RR*TATIHLAXKNALFTVSIGVGSGRAS 471
NP DGLLMAEK K TVSIGVGSGRAS
Sbjct: 234 NPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRAS 275
>UniRef50_Q6D9G9 Cluster: Altronate oxidoreductase; n=45;
Gammaproteobacteria|Rep: Altronate oxidoreductase -
Erwinia carotovora subsp. atroseptica (Pectobacterium
atrosepticum)
Length = 488
Score = 82.2 bits (194), Expect = 8e-15
Identities = 33/41 (80%), Positives = 40/41 (97%)
Frame = -2
Query: 123 VKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEH 1
++TLNRR+FPG Q+P+R+IQFGEGNFLRAFVDWQ+DLLNEH
Sbjct: 1 MQTLNRRNFPGRQHPDRVIQFGEGNFLRAFVDWQLDLLNEH 41
>UniRef50_O34354 Cluster: Altronate oxidoreductase; n=2;
Bacillus|Rep: Altronate oxidoreductase - Bacillus
subtilis
Length = 480
Score = 60.5 bits (140), Expect = 3e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = -2
Query: 87 QYPERIIQFGEGNFLRAFVDWQIDLLNEH 1
QYPE+I+QFGEGNFLR F+DWQID LN+H
Sbjct: 14 QYPEKILQFGEGNFLRGFIDWQIDQLNQH 42
>UniRef50_Q97L67 Cluster: Altronate oxidoreductase; n=2;
Bacteria|Rep: Altronate oxidoreductase - Clostridium
acetobutylicum
Length = 482
Score = 58.4 bits (135), Expect = 1e-07
Identities = 25/38 (65%), Positives = 32/38 (84%), Gaps = 1/38 (2%)
Frame = -2
Query: 114 LNRRDFPG-AQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
LNR +F +YPE+I+QFGEGNFLRAFVDWQ+D +N+
Sbjct: 3 LNRSNFSEFKKYPEKILQFGEGNFLRAFVDWQVDRMNK 40
>UniRef50_Q8A9J0 Cluster: Altronate oxidoreductase; n=5;
Bacteroidales|Rep: Altronate oxidoreductase -
Bacteroides thetaiotaomicron
Length = 479
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/40 (65%), Positives = 30/40 (75%)
Frame = -2
Query: 123 VKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
+K LN+ P Q PERIIQFGEGNFLRAFVDW I +N+
Sbjct: 1 MKALNKETAPKVQRPERIIQFGEGNFLRAFVDWIIYNMNQ 40
>UniRef50_Q2B7Q1 Cluster: Tagaturonate reductase; n=3;
Firmicutes|Rep: Tagaturonate reductase - Bacillus sp.
NRRL B-14911
Length = 487
Score = 54.0 bits (124), Expect = 3e-06
Identities = 21/27 (77%), Positives = 24/27 (88%)
Frame = -2
Query: 84 YPERIIQFGEGNFLRAFVDWQIDLLNE 4
+PERI+QFGEGNFLR F DWQI +LNE
Sbjct: 14 FPERILQFGEGNFLRGFADWQIQILNE 40
>UniRef50_A6PMI1 Cluster: Mannitol dehydrogenase, C-terminal domain;
n=1; Victivallis vadensis ATCC BAA-548|Rep: Mannitol
dehydrogenase, C-terminal domain - Victivallis vadensis
ATCC BAA-548
Length = 500
Score = 53.2 bits (122), Expect = 4e-06
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = -2
Query: 129 PIVKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
P ++T + P +YP +++QFGEGNFLRAF+DW ID NE
Sbjct: 10 PSIQTKDLVIGPREEYPVKVMQFGEGNFLRAFIDWMIDKSNE 51
>UniRef50_Q9KFI7 Cluster: Altronate oxidoreductase; n=1; Bacillus
halodurans|Rep: Altronate oxidoreductase - Bacillus
halodurans
Length = 512
Score = 52.0 bits (119), Expect = 1e-05
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = -2
Query: 126 IVKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
+V + N + +Q PER++QFGEGNFLR F+DW I +N+
Sbjct: 8 LVTSRNMIRYKSSQLPERVLQFGEGNFLRGFIDWMIQQMNK 48
>UniRef50_A0M230 Cluster: Altronate oxidoreductase; n=1; Gramella
forsetii KT0803|Rep: Altronate oxidoreductase - Gramella
forsetii (strain KT0803)
Length = 499
Score = 51.6 bits (118), Expect = 1e-05
Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = -2
Query: 123 VKTLNRRDF-PGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
+K LNR +YPER++QFG GNFLRAF DW I+ LNE
Sbjct: 10 MKQLNRNTANKPIEYPERVLQFGGGNFLRAFCDWMINELNE 50
>UniRef50_Q5WKX0 Cluster: Altronate oxidoreductase; n=1; Bacillus
clausii KSM-K16|Rep: Altronate oxidoreductase - Bacillus
clausii (strain KSM-K16)
Length = 509
Score = 51.2 bits (117), Expect = 2e-05
Identities = 22/29 (75%), Positives = 23/29 (79%)
Frame = -2
Query: 90 AQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
A PERIIQFGEGNFLR FVDW I LN+
Sbjct: 28 AHLPERIIQFGEGNFLRGFVDWMIHTLNK 56
>UniRef50_A1HM18 Cluster: Mannitol dehydrogenase, C-terminal domain
precursor; n=3; Clostridiales|Rep: Mannitol
dehydrogenase, C-terminal domain precursor - Thermosinus
carboxydivorans Nor1
Length = 508
Score = 50.0 bits (114), Expect = 4e-05
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = -2
Query: 90 AQYPERIIQFGEGNFLRAFVDWQIDLLN 7
A PER+IQFGEGNFLRAFVDW LN
Sbjct: 26 ADLPERVIQFGEGNFLRAFVDWMFHKLN 53
>UniRef50_A7AYR9 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 503
Score = 47.6 bits (108), Expect = 2e-04
Identities = 19/26 (73%), Positives = 24/26 (92%)
Frame = -2
Query: 81 PERIIQFGEGNFLRAFVDWQIDLLNE 4
PER++QFGEGNF+RAFVD+ ID +NE
Sbjct: 23 PERVLQFGEGNFMRAFVDFFIDKMNE 48
>UniRef50_Q3Y3F7 Cluster: Mannitol dehydrogenase; n=1; Enterococcus
faecium DO|Rep: Mannitol dehydrogenase - Enterococcus
faecium DO
Length = 473
Score = 45.6 bits (103), Expect = 9e-04
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = -2
Query: 123 VKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLN 7
+K L + + P +++QFGEGNF+R F+DWQI LN
Sbjct: 1 MKKLTKELVKKNEAPVKVLQFGEGNFMRGFIDWQIQQLN 39
>UniRef50_Q1FGP6 Cluster: Mannitol dehydrogenase; n=1; Clostridium
phytofermentans ISDg|Rep: Mannitol dehydrogenase -
Clostridium phytofermentans ISDg
Length = 485
Score = 45.2 bits (102), Expect = 0.001
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 114 LNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
LN+ P +++QFGEGNFLR FVD+ ID+ NE
Sbjct: 4 LNKSISKAKDRPVKVLQFGEGNFLRGFVDYMIDVANE 40
>UniRef50_A4E8T4 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 504
Score = 43.2 bits (97), Expect = 0.005
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = -2
Query: 81 PERIIQFGEGNFLRAFVDWQIDLLNE 4
PE+++QFGEGNFLRAFVD D+ NE
Sbjct: 24 PEKVLQFGEGNFLRAFVDRFFDMGNE 49
>UniRef50_Q5WIW3 Cluster: Altronate oxidoreductase; n=1; Bacillus
clausii KSM-K16|Rep: Altronate oxidoreductase - Bacillus
clausii (strain KSM-K16)
Length = 493
Score = 42.7 bits (96), Expect = 0.006
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -2
Query: 141 IRREPIVKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
I + + K L ++ P + E I+Q GEGNF+R F+DW +D L++
Sbjct: 4 IETKQLTKKLVGQETPAGK--ETIVQIGEGNFMRGFIDWMVDQLHQ 47
>UniRef50_A5FC00 Cluster: Mannitol dehydrogenase, C-terminal
domain; n=2; Flavobacteriaceae|Rep: Mannitol
dehydrogenase, C-terminal domain - Flavobacterium
johnsoniae UW101
Length = 482
Score = 41.5 bits (93), Expect = 0.015
Identities = 17/26 (65%), Positives = 22/26 (84%)
Frame = -2
Query: 81 PERIIQFGEGNFLRAFVDWQIDLLNE 4
P +I+QFGEGNFLRAFV++ I LN+
Sbjct: 16 PIKIVQFGEGNFLRAFVEYAIQKLNQ 41
>UniRef50_A3HWR4 Cluster: Tagaturonate reductase; n=1; Algoriphagus
sp. PR1|Rep: Tagaturonate reductase - Algoriphagus sp.
PR1
Length = 467
Score = 41.1 bits (92), Expect = 0.019
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = -2
Query: 123 VKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNE 4
+KTL++ + P +I+QFG GNFLR F D+ ++ NE
Sbjct: 1 MKTLSKSFVSRQERPVKILQFGNGNFLRGFTDYMVEEANE 40
>UniRef50_Q5QV72 Cluster: Intracellular signaling protein; n=2;
Idiomarina|Rep: Intracellular signaling protein -
Idiomarina loihiensis
Length = 453
Score = 38.3 bits (85), Expect = 0.14
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -2
Query: 471 DLTLTDDFNKLMVEADTCLYRSKKDGRNRTS 379
+L D+FN +AD LY+SK+DGRNR S
Sbjct: 419 ELKAEDEFNSAYKKADLALYKSKRDGRNRVS 449
>UniRef50_Q1MBP1 Cluster: Putative transmembrane sensory box GGDEF
domain protein precursor; n=1; Rhizobium leguminosarum
bv. viciae 3841|Rep: Putative transmembrane sensory box
GGDEF domain protein precursor - Rhizobium leguminosarum
bv. viciae (strain 3841)
Length = 385
Score = 38.3 bits (85), Expect = 0.14
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 361
+DF +LM +AD LYRSK++GRNR +GE
Sbjct: 351 EDFERLMQKADEALYRSKREGRNRVEV--FGE 380
>UniRef50_A0G250 Cluster: Diguanylate cyclase; n=1; Burkholderia
phymatum STM815|Rep: Diguanylate cyclase - Burkholderia
phymatum STM815
Length = 316
Score = 36.7 bits (81), Expect = 0.41
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -2
Query: 462 LTDDFNKLMVEADTCLYRSKKDGRNRT 382
L+DD N + AD+ LY +K++GRNRT
Sbjct: 282 LSDDLNTTLARADSALYSAKREGRNRT 308
>UniRef50_Q2W154 Cluster: Putative uncharacterized protein; n=2;
Magnetospirillum|Rep: Putative uncharacterized protein -
Magnetospirillum magneticum (strain AMB-1 / ATCC 700264)
Length = 802
Score = 35.9 bits (79), Expect = 0.72
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRN 388
D+FN LM +ADT +YR+K+ GRN
Sbjct: 507 DNFNALMKDADTAMYRAKQKGRN 529
>UniRef50_A5NQ24 Cluster: Diguanylate cyclase; n=1; Methylobacterium
sp. 4-46|Rep: Diguanylate cyclase - Methylobacterium sp.
4-46
Length = 438
Score = 35.9 bits (79), Expect = 0.72
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTMR 370
D ++L+ EAD LYR+K +GRNR S R
Sbjct: 400 DALDRLIAEADLALYRAKAEGRNRVSAAR 428
>UniRef50_Q3IKK3 Cluster: Putative uncharacterized protein; n=1;
Pseudoalteromonas haloplanktis TAC125|Rep: Putative
uncharacterized protein - Pseudoalteromonas haloplanktis
(strain TAC 125)
Length = 962
Score = 35.5 bits (78), Expect = 0.96
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTM 373
DD+++L+ AD LY++K GRNRT M
Sbjct: 935 DDYDRLLSGADQALYKAKNGGRNRTEIM 962
>UniRef50_Q2W9E2 Cluster: Predicted signal transduction protein;
n=2; Magnetospirillum|Rep: Predicted signal transduction
protein - Magnetospirillum magneticum (strain AMB-1 /
ATCC 700264)
Length = 679
Score = 35.5 bits (78), Expect = 0.96
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV*HLYS 337
DD KL + AD +Y++K+ G+N+ + + GE+ ++S
Sbjct: 400 DDAQKLAIAADVAIYKAKRSGKNQVAVIGEGEDATVAIFS 439
>UniRef50_Q9HZX6 Cluster: Putative uncharacterized protein; n=6;
Pseudomonas aeruginosa|Rep: Putative uncharacterized
protein - Pseudomonas aeruginosa
Length = 525
Score = 35.1 bits (77), Expect = 1.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRT 382
DD L+V AD+ LY++K GRNRT
Sbjct: 496 DDLESLLVRADSALYQAKSGGRNRT 520
>UniRef50_Q3SFL9 Cluster: Putative diguanylate cyclase; n=1;
Thiobacillus denitrificans ATCC 25259|Rep: Putative
diguanylate cyclase - Thiobacillus denitrificans (strain
ATCC 25259)
Length = 843
Score = 34.7 bits (76), Expect = 1.7
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNR 385
+F++L++ AD LYR+KK GRNR
Sbjct: 806 EFDQLLIAADAALYRAKKKGRNR 828
>UniRef50_A0NV57 Cluster: Putative diguanylate
cyclase/phosphodiesterase (GGDEF & EAL domains) with
PAS/PAC sensor; n=1; Stappia aggregata IAM 12614|Rep:
Putative diguanylate cyclase/phosphodiesterase (GGDEF &
EAL domains) with PAS/PAC sensor - Stappia aggregata IAM
12614
Length = 1049
Score = 34.7 bits (76), Expect = 1.7
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTMR 370
DDF+ L+V AD LY+SK++G++R + R
Sbjct: 749 DDFDTLLVNADLALYQSKENGKDRYTFFR 777
>UniRef50_Q5QUQ3 Cluster: Intracellular signaling protein; n=2;
Idiomarina|Rep: Intracellular signaling protein -
Idiomarina loihiensis
Length = 369
Score = 34.3 bits (75), Expect = 2.2
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -2
Query: 597 ESLRWSANGGKKXVKALNCNHSPGXKKRFIH---GKYWRR*WSRIDLTLTDDFNKLMVEA 427
E + S N + V+ L H P + ++ G Y + R D D +++ +A
Sbjct: 293 EKTKESMNQLLEAVRNLKIKHEPSEVEPYLTISIGGYIHK--PRADEDTEDLIARMISKA 350
Query: 426 DTCLYRSKKDGRNR 385
D+ LYR+K DGRNR
Sbjct: 351 DSALYRAKSDGRNR 364
>UniRef50_Q47FH1 Cluster: PAS:GGDEF; n=1; Dechloromonas aromatica
RCB|Rep: PAS:GGDEF - Dechloromonas aromatica (strain
RCB)
Length = 820
Score = 34.3 bits (75), Expect = 2.2
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Frame = -2
Query: 459 TDDFNK--LMVEADTCLYRSKKDGRNRTST 376
T+D N+ + AD LYRSKKDGRNR S+
Sbjct: 791 TEDANEDETVRRADAALYRSKKDGRNRVSS 820
>UniRef50_A6PC93 Cluster: Diguanylate cyclase precursor; n=1;
Shewanella sediminis HAW-EB3|Rep: Diguanylate cyclase
precursor - Shewanella sediminis HAW-EB3
Length = 610
Score = 34.3 bits (75), Expect = 2.2
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNRTS 379
D K+ +AD +Y+SK DGRNRT+
Sbjct: 555 DLEKITADADMAMYQSKHDGRNRTT 579
>UniRef50_A0XI66 Cluster: Diguanylate cyclase; n=2;
Desulfuromonadales|Rep: Diguanylate cyclase - Geobacter
lovleyi SZ
Length = 253
Score = 34.3 bits (75), Expect = 2.2
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNRTSTM 373
+F +L+ EAD LYR+K GRNR +T+
Sbjct: 223 NFEQLVAEADKALYRAKHAGRNRVATI 249
>UniRef50_A6GTR0 Cluster: GGDEF domain; n=1; Limnobacter sp.
MED105|Rep: GGDEF domain - Limnobacter sp. MED105
Length = 347
Score = 33.9 bits (74), Expect = 2.9
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = -2
Query: 471 DLTLTDDFNKLMVEADTCLYRSKKDGRNRT 382
D++ TD ++ M +AD LY++K GRNR+
Sbjct: 311 DISHTDSIDRTMAQADHALYQAKNKGRNRS 340
>UniRef50_A6CIA7 Cluster: YhcK; n=1; Bacillus sp. SG-1|Rep: YhcK -
Bacillus sp. SG-1
Length = 327
Score = 33.9 bits (74), Expect = 2.9
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 459 TDDFNKLMVEADTCLYRSKKDGRNR 385
TDD L+ +AD+ LY +KK GRNR
Sbjct: 289 TDDVTSLIEDADSALYMAKKTGRNR 313
>UniRef50_A5V5W5 Cluster: Diguanylate cyclase precursor; n=1;
Sphingomonas wittichii RW1|Rep: Diguanylate cyclase
precursor - Sphingomonas wittichii RW1
Length = 1004
Score = 33.9 bits (74), Expect = 2.9
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTM 373
+DF +L ADT LY +K+ GRNR T+
Sbjct: 972 EDFGRLYARADTGLYAAKQAGRNRVETV 999
>UniRef50_A3YBR1 Cluster: Diguanylate cyclase; n=1; Marinomonas sp.
MED121|Rep: Diguanylate cyclase - Marinomonas sp. MED121
Length = 363
Score = 33.9 bits (74), Expect = 2.9
Identities = 12/27 (44%), Positives = 21/27 (77%)
Frame = -2
Query: 459 TDDFNKLMVEADTCLYRSKKDGRNRTS 379
T+ + +++ EAD+ LY +K++GRNR S
Sbjct: 332 TNRYEEILAEADSALYSAKREGRNRVS 358
>UniRef50_UPI0000E11028 Cluster: diguanylate cyclase (GGDEF domain);
n=1; alpha proteobacterium HTCC2255|Rep: diguanylate
cyclase (GGDEF domain) - alpha proteobacterium HTCC2255
Length = 323
Score = 33.5 bits (73), Expect = 3.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNRTSTMRY 367
D N L+ AD LY+SK GRN+ + + Y
Sbjct: 284 DINSLLAHADEALYKSKHQGRNQVTLLPY 312
>UniRef50_Q89M46 Cluster: Bll4347 protein; n=11;
Bradyrhizobiaceae|Rep: Bll4347 protein - Bradyrhizobium
japonicum
Length = 355
Score = 33.5 bits (73), Expect = 3.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNR 385
DD + L+ AD CLY +K++GRNR
Sbjct: 314 DDTDALIERADACLYAAKRNGRNR 337
>UniRef50_Q41DL7 Cluster: GGDEF; n=1; Exiguobacterium sibiricum
255-15|Rep: GGDEF - Exiguobacterium sibiricum 255-15
Length = 373
Score = 33.5 bits (73), Expect = 3.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 459 TDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 355
T ++ +AD LY+SK++GRNR + EEV
Sbjct: 332 TGQIQHIVTDADAALYQSKQNGRNRVTLFSLQEEV 366
>UniRef50_Q0HX74 Cluster: Diguanylate cyclase precursor; n=11;
Shewanella|Rep: Diguanylate cyclase precursor -
Shewanella sp. (strain MR-7)
Length = 578
Score = 33.5 bits (73), Expect = 3.9
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNRTSTMRYGE 361
D N ++ +AD LY++K+ GRNRT +R+ E
Sbjct: 544 DANLVISDADEALYQAKQAGRNRTIALRHPE 574
>UniRef50_A6WAS9 Cluster: Diguanylate cyclase; n=1; Kineococcus
radiotolerans SRS30216|Rep: Diguanylate cyclase -
Kineococcus radiotolerans SRS30216
Length = 698
Score = 33.5 bits (73), Expect = 3.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -2
Query: 483 WSRIDLTLTDDFNKLMVEADTCLYRSKKDGRNR 385
W+ + L DD L+ ADT LYR+K+ GR+R
Sbjct: 660 WAVANPALEDDEQSLIRAADTALYRAKEHGRDR 692
>UniRef50_Q8UFY7 Cluster: GGDEF family protein; n=2; Agrobacterium
tumefaciens str. C58|Rep: GGDEF family protein -
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Length = 415
Score = 33.1 bits (72), Expect = 5.1
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNRT 382
D + +M EAD LY +KK GRNRT
Sbjct: 351 DLSVMMTEADRALYAAKKAGRNRT 374
>UniRef50_Q748N2 Cluster: Sensory box/GGDEF family protein; n=4;
Bacteria|Rep: Sensory box/GGDEF family protein -
Geobacter sulfurreducens
Length = 315
Score = 33.1 bits (72), Expect = 5.1
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 462 LTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEV 355
L D L+ ADT +YRSK+ GRN S + +GEE+
Sbjct: 270 LDDTVESLVQRADTLMYRSKQAGRNCVS-IGFGEEM 304
>UniRef50_Q317L8 Cluster: Diguanylate cyclase (GGDEF domain)
precursor; n=1; Desulfovibrio desulfuricans G20|Rep:
Diguanylate cyclase (GGDEF domain) precursor -
Desulfovibrio desulfuricans (strain G20)
Length = 411
Score = 33.1 bits (72), Expect = 5.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTM 373
DDF ++ +AD LY++KK GRN+ + +
Sbjct: 384 DDFESVLKKADKALYKAKKAGRNKVALL 411
>UniRef50_Q2KZ95 Cluster: Putative signaling membrane protein; n=1;
Bordetella avium 197N|Rep: Putative signaling membrane
protein - Bordetella avium (strain 197N)
Length = 345
Score = 33.1 bits (72), Expect = 5.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 468 LTLTDDFNKLMVEADTCLYRSKKDGRNR 385
L L D + M ADT LY++K+DGRNR
Sbjct: 310 LQLGDTVSSWMRRADTLLYQAKRDGRNR 337
>UniRef50_A4ABI7 Cluster: Sensory box/GGDEF family protein; n=1;
Congregibacter litoralis KT71|Rep: Sensory box/GGDEF
family protein - Congregibacter litoralis KT71
Length = 654
Score = 33.1 bits (72), Expect = 5.1
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 459 TDDFNKLMVEADTCLYRSKKDGRN 388
T+D + L+ ADT +YR+K DGRN
Sbjct: 356 TNDVDDLLKHADTAMYRAKDDGRN 379
>UniRef50_A1K9E0 Cluster: GGDEF/PAS/PAC-domain containing protein;
n=2; Azoarcus|Rep: GGDEF/PAS/PAC-domain containing
protein - Azoarcus sp. (strain BH72)
Length = 579
Score = 33.1 bits (72), Expect = 5.1
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = -2
Query: 441 LMVEADTCLYRSKKDGRNR 385
LMV AD +YRSK DGRNR
Sbjct: 529 LMVAADQAMYRSKSDGRNR 547
>UniRef50_Q9KRN7 Cluster: GGDEF family protein; n=18; Vibrio
cholerae|Rep: GGDEF family protein - Vibrio cholerae
Length = 353
Score = 32.7 bits (71), Expect = 6.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTMRYG 364
D N L+ AD LYR+KK GRN+ R+G
Sbjct: 309 DQLNDLLKFADMELYRAKKAGRNQVRLFRHG 339
>UniRef50_Q5H2X7 Cluster: Response regulator; n=9; Xanthomonas|Rep:
Response regulator - Xanthomonas oryzae pv. oryzae
Length = 515
Score = 32.7 bits (71), Expect = 6.7
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = -2
Query: 447 NKLMVEADTCLYRSKKDGRNRTS 379
N ++ +AD+ LYR+K+ GRNRTS
Sbjct: 492 NAIVHDADSALYRAKQKGRNRTS 514
>UniRef50_Q3A1R9 Cluster: GGDEF domain containing protein; n=1;
Pelobacter carbinolicus DSM 2380|Rep: GGDEF domain
containing protein - Pelobacter carbinolicus (strain DSM
2380 / Gra Bd 1)
Length = 498
Score = 32.7 bits (71), Expect = 6.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNRTSTM 373
+ + LM+ AD LY SKK G+N+T T+
Sbjct: 459 ETLDHLMMRADAALYESKKQGKNQTVTL 486
>UniRef50_A6V917 Cluster: Membrane protein, putative; n=7;
Pseudomonas aeruginosa|Rep: Membrane protein, putative -
Pseudomonas aeruginosa PA7
Length = 1105
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 447 NKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV 352
++LM +AD Y +K GRNR S ++G E V
Sbjct: 808 SELMSQADVACYAAKHAGRNRVSVYQFGHEEV 839
>UniRef50_A5V9I8 Cluster: Diguanylate cyclase; n=1; Sphingomonas
wittichii RW1|Rep: Diguanylate cyclase - Sphingomonas
wittichii RW1
Length = 343
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 468 LTLTDDFNKLMVEADTCLYRSKKDGRNR 385
L L D ++ AD LYR+K+DGRNR
Sbjct: 311 LDLQDSPGSILKRADAALYRAKQDGRNR 338
>UniRef50_A5FPU8 Cluster: Diguanylate cyclase and metal dependent
phosphohydrolase; n=3; Dehalococcoides|Rep: Diguanylate
cyclase and metal dependent phosphohydrolase -
Dehalococcoides sp. BAV1
Length = 841
Score = 32.7 bits (71), Expect = 6.7
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -2
Query: 444 KLMVEADTCLYRSKKDGRNRTS 379
+++ +AD LYRSK+ GRNRTS
Sbjct: 601 EIIAKADAALYRSKETGRNRTS 622
>UniRef50_A1W8G6 Cluster: Diguanylate cyclase/phosphodiesterase with
PAS/PAC and GAF sensor(S) precursor; n=5; cellular
organisms|Rep: Diguanylate cyclase/phosphodiesterase
with PAS/PAC and GAF sensor(S) precursor - Acidovorax
sp. (strain JS42)
Length = 756
Score = 32.7 bits (71), Expect = 6.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRN 388
DF L+ ADT +YR+K DGRN
Sbjct: 464 DFETLIQSADTAMYRAKADGRN 485
>UniRef50_A1ASG6 Cluster: Diguanylate cyclase with PAS/PAC sensor;
n=1; Pelobacter propionicus DSM 2379|Rep: Diguanylate
cyclase with PAS/PAC sensor - Pelobacter propionicus
(strain DSM 2379)
Length = 505
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNR 385
DD N L+ ADT LY +K+ GRNR
Sbjct: 463 DDINALIKRADTALYAAKEMGRNR 486
>UniRef50_A0Y3B7 Cluster: Response regulator containing a CheY-like
receiver domain and a GGDEF domain; n=1; Alteromonadales
bacterium TW-7|Rep: Response regulator containing a
CheY-like receiver domain and a GGDEF domain -
Alteromonadales bacterium TW-7
Length = 362
Score = 32.7 bits (71), Expect = 6.7
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -2
Query: 453 DFNKLMVEADTCLYRSKKDGRNR 385
D+N + +AD CLY++K+ GRN+
Sbjct: 334 DYNDALKQADRCLYKAKETGRNK 356
>UniRef50_Q1GYK0 Cluster: Diguanylate cyclase/phosphodiesterase;
n=1; Methylobacillus flagellatus KT|Rep: Diguanylate
cyclase/phosphodiesterase - Methylobacillus flagellatus
(strain KT / ATCC 51484 / DSM 6875)
Length = 617
Score = 32.3 bits (70), Expect = 8.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRN 388
+D N LM++AD +Y +K++GRN
Sbjct: 314 EDANNLMIKADAAMYEAKRNGRN 336
>UniRef50_A2SDI4 Cluster: Signal transduction protein; n=1;
Methylibium petroleiphilum PM1|Rep: Signal transduction
protein - Methylibium petroleiphilum (strain PM1)
Length = 1006
Score = 32.3 bits (70), Expect = 8.9
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNR 385
+D + LM AD +YRSK++GRNR
Sbjct: 709 EDPDTLMKRADAAMYRSKREGRNR 732
>UniRef50_A0L7S5 Cluster: Response regulator receiver modulated
diguanylate cyclase with PAS/PAC sensor; n=1;
Magnetococcus sp. MC-1|Rep: Response regulator receiver
modulated diguanylate cyclase with PAS/PAC sensor -
Magnetococcus sp. (strain MC-1)
Length = 571
Score = 32.3 bits (70), Expect = 8.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -2
Query: 456 DDFNKLMVEADTCLYRSKKDGRNR 385
+ KL+ ADT +YR+K++GRNR
Sbjct: 535 NSITKLLKSADTAMYRAKQEGRNR 558
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,941,709
Number of Sequences: 1657284
Number of extensions: 12634072
Number of successful extensions: 25549
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 24883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25547
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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