Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0299.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   1.6  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    27   2.7  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   6.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.3  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    25   8.4  

>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 152 TCLNWYDRLANFNTPNPCFDQLLMINEQFY--EKSVGGSW 265
           TCL+WY R  N N P     Q +   E+ Y  +  V G+W
Sbjct: 177 TCLDWYFRFINCNWPIFYKKQYMESFEKLYIDKNLVKGAW 216


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 167 YDRLANFNTPNPCFDQLLMINEQFYE 244
           Y  L+NF+    C+ + LM++ + YE
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYE 235


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 113 SVFTMGSLLISHTTCLNWYDRLANFNTPNPCFDQLLMINEQFY 241
           S +T+G + +++ + +N + +L  FN P       ++ N  FY
Sbjct: 162 SAWTVGGIALNNFSTINDFSKLWAFNHPLMYPKSAIVFNAHFY 204


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 81  PERIIQFGEGNFLRAFV-DWQIDLLNEH 1
           PER+++   G F+ +F+   + DLLN H
Sbjct: 856 PERLLESAAGQFIISFITSEKSDLLNTH 883


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 413 IARRKMGATVPALCVTVRKLSDIFIHY 333
           +A  KM +    + V +RK++D+FI Y
Sbjct: 68  LALSKMNSDAMEMLVFLRKMADVFIDY 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,707
Number of Sequences: 5004
Number of extensions: 53135
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)