Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0299.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0351 - 23382786-23382821,23383373-23383634,23384369-233856...    30   1.6  
09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490     28   4.9  
04_04_0497 + 25646005-25646142,25647320-25647395,25647506-256475...    28   4.9  
09_06_0254 - 21872694-21872873,21872992-21873046,21873548-218736...    27   8.6  

>03_05_0351 -
           23382786-23382821,23383373-23383634,23384369-23385675,
           23385776-23386290,23386379-23386741,23386916-23387284,
           23387365-23388057,23388152-23388238,23388354-23388612
          Length = 1296

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -1

Query: 439 DGRSRYV-SVSLEERWAQPYQHYALR*GSCLTSLFITRDLNAM 314
           DG+SR V    L+ RW  PY  Y LR  +C  ++ +   + A+
Sbjct: 837 DGKSRVVRGHPLDNRWVVPYNPYLLRMYNCHMNVEVCSSIKAV 879


>09_04_0446 - 17680408-17680721,17680812-17681108,17682740-17683490
          Length = 453

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 196 RRIKVC*PVVPIQTGCMTNQKGTHC 122
           +R ++C P +PIQ  C +N K   C
Sbjct: 426 KRSRLCNPAIPIQQECSSNLKSNLC 450


>04_04_0497 +
           25646005-25646142,25647320-25647395,25647506-25647580,
           25647717-25647804,25647901-25648207
          Length = 227

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 80  GYCAPGKSRRFSVFTMGSLLISHTTCLNWYD---RLANFNTPNPCFDQLL 220
           G C  G SRR       ++L+SH   ++ Y    ++   NT NP   +LL
Sbjct: 176 GSCNSGDSRREPYTAAHNILLSHAAAVHNYKTNYQVTTHNTTNPSLAELL 225


>09_06_0254 -
           21872694-21872873,21872992-21873046,21873548-21873600,
           21873683-21873759,21873842-21873965,21874050-21874175,
           21874861-21875011,21875112-21875220,21875791-21875854,
           21876334-21876450
          Length = 351

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +2

Query: 260 SWFNRGK-TPFPGS*SGRTHCIQIARNE*RCQTTSSP*RIVLVR 388
           +W   G  + FPG  SG T C+ I RN+      +   R VL R
Sbjct: 143 TWTEEGPHSHFPGPTSGSTACVAIIRNDELIVANAGDSRCVLSR 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,784,539
Number of Sequences: 37544
Number of extensions: 348996
Number of successful extensions: 654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)