Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0299.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47683| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_17847| Best HMM Match : Glyco_hydro_10 (HMM E-Value=0.00078)        27   8.7  
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_15333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 350 QTTSSP*RIVLVRLRPSFFERYRHVSASTINLLKSSVSVRSMRD 481
           Q+ + P      RLR S F+R+RH +  ++   K  + +    D
Sbjct: 338 QSQAQPQNAATTRLRNSSFDRFRHAALRSVTRSKKLIKINEGED 381


>SB_47683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 161 NWYDRLANFNTPNPCFDQLLMINEQFYEKSVGGSWF 268
           N   R   F    P  DQ +M  +Q YEKS G SWF
Sbjct: 24  NRISRKTPFRRKIPKEDQAVM-GQQPYEKSCGSSWF 58


>SB_17847| Best HMM Match : Glyco_hydro_10 (HMM E-Value=0.00078)
          Length = 182

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -1

Query: 433 RSRYVSVSLEERWAQPYQHYA---LR*GSCLTSLFITRDLNAMCSTTL 299
           R+RY S   E R+ QPY   A   +R GS + +L +      M + TL
Sbjct: 60  RTRYTSTLSEHRYLQPYVELANTIIRHGSPVDALGVQGHFTGMVNPTL 107


>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2541

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +3

Query: 246 KVWADHGLIEEKRLFL--DHKVVEH 314
           K WA + L+EE+R F   +H V EH
Sbjct: 720 KAWAPYRLLEEERQFTSGEHSVAEH 744


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,437,306
Number of Sequences: 59808
Number of extensions: 406633
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)