Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0299.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AL031630-2|CAA21000.1|  310|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    27   7.7  

>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 435 VEADTCLYRSKKDGRNRTSTMRYGEEVV 352
           +E D C ++  K   N+ S  RY EE V
Sbjct: 84  IEGDKCTFKFPKASNNKESAQRYCEETV 111


>AL031630-2|CAA21000.1|  310|Caenorhabditis elegans Hypothetical
           protein Y38H6C.2 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 428 PIRVCIARRKMGATVPALCVTVRKLSDIFIHYARFECNVFYHFMI 294
           PI +      + A+ PA+  T+R L DIF  +      V  HF+I
Sbjct: 224 PIGILYISTGLLASHPAIVTTIRYLMDIFTSFVAINATV--HFLI 266


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 93  RENRDDLVFSQWVPF*LVIQ 152
           RE R+ +++ QWVPF LVIQ
Sbjct: 95  REGRE-MIYYQWVPFLLVIQ 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,888
Number of Sequences: 27780
Number of extensions: 305014
Number of successful extensions: 596
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)