Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0299.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    29   2.4  
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00...    29   3.1  
At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsi...    28   5.4  

>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 71  IRSGYCAPGKSRRFSVFTMGSLLISHTTCLNWYDRLANFNTPNP 202
           ++  Y     ++RF V+     L S ++C+NW D  A +  P+P
Sbjct: 116 VKKTYFTRDATKRF-VYNSNFDLYSSSSCVNWRDSFACYMAPDP 158


>At4g02740.1 68417.m00374 F-box family protein contains Pfam
           PF00646: F-box domain; similar to F-box protein FBL2
           (GI:6063090) [Homo sapiens]
          Length = 645

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 585 WSANGGK--KXVKALNCNHSPGXKKRFIHGKYW 493
           W+ N  +  + +K LN + SP  K RF+  KYW
Sbjct: 265 WARNLAESCRKLKYLNLSRSPTIKGRFLRKKYW 297


>At1g05360.1 68414.m00543 expressed protein Similar to Arabidopsis
           hypothetical protein PID:e326839 (gb|Z97337) contains
           transmembrane domains
          Length = 416

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 131 SLLISHTTCLNWYDRLANFNTPNPCFDQLLMINEQF 238
           S L+SH+  LN++  L   + PNP FD   ++  QF
Sbjct: 239 SWLLSHSQYLNFFTILILASVPNPLFDLAGIMCGQF 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,434,482
Number of Sequences: 28952
Number of extensions: 280630
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)