Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0297.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    38   0.001
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    31   0.13 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.7  
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    26   3.6  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.8  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.8  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   4.8  
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me...    26   4.8  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.3  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   6.3  

>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -1

Query: 442 DMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHI 263
           DM  ++ V   + PEG+T I++ +P  ++    +    +LDT GR V ++   N+ +   
Sbjct: 352 DMIYEKAVWSYVFPEGATNIEIEMPVEISNSNVTKIHKFLDTLGRQVFTYEALNVTDGVP 411

Query: 262 QDFKSVIHSH 233
            D   + + +
Sbjct: 412 SDIVHISYEY 421



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 584 LDLRPRYPLFXGWRTHYTL 528
           ++L PRYP+F GW   + L
Sbjct: 305 IELNPRYPVFGGWNYLFQL 323


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 257 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLD 147
           F   +TFP  L++ EP+L+V   YT F+  I+Y  L+
Sbjct: 291 FHKYFTFPLRLLIFEPILLVVSTYTAFVYGILYGLLE 327


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
 Frame = -1

Query: 526 VQCP*LEYLYHSGNEYLLKMR---SIDHIFDDMQ-VDELV-TKIILPEGSTGIKLNIPYS 362
           + CP    LY +  E L+  R   S D++   +  VD+L+ TKI++  G T      P +
Sbjct: 350 MDCP--SELYQTRRELLVATRHVLSTDYLRGFLPYVDQLLDTKILVGSGITSQHSLRPMA 407

Query: 361 VTRLPDSLHFTYLDTKGRPVISFI 290
            + L D LH+  ++   + +   I
Sbjct: 408 FSMLADMLHYVRMELSPQQIYKVI 431


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -1

Query: 511 LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIK 380
           ++ LYH      L++  + H F+D  VD +  +I L + STG+K
Sbjct: 297 IKQLYHE-----LQIPELYHKFEDDMVDSISKEIDLIDESTGLK 335


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -1

Query: 481  YLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPV 302
            Y ++  +  H+    Q +E   + +    S   KL    ++ R P S   + LDT  R  
Sbjct: 1557 YTIESNTTAHLL--CQFEEACRQALTSSKSVRTKLRAISTIQRFPVSEWVSKLDTHVRNC 1614

Query: 301  ISFI-KKNIVENHIQD 257
            I F  K+N+ E+ I +
Sbjct: 1615 IKFSHKQNLEEDFIHE 1630


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 343  SLHFTYLDTKGRPVISFIKKN 281
            S+ F  +D  G PVI F+K+N
Sbjct: 1511 SVDFQSVDCHGNPVIEFLKRN 1531


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 176 KTMYIRSQQLKVVPATSADVGMYNGFEILDMVLHNVFLYKRDY 304
           + ++ RSQ L+ +  +  D      FE+  + LH ++ Y R+Y
Sbjct: 259 QALHTRSQYLREMSNSIEDWDYELMFEVAKLRLHGMYKYPRNY 301


>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
           methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 68  LTRCVKSGNNMFHYKFNLYVQTCELKN 148
           L    K+G N F+YKF+ Y++    +N
Sbjct: 224 LALLAKNGGNEFYYKFSQYIKRMLQRN 250


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 323 RY*RSSSNL-VYKEKHCGEPYPRFQIRYTFPR--LLMLQEPLLVVGFLYTLFLCVIIYV 156
           RY R  +N   +  +H  +  P + IR    R   L+  EP++    +Y +F+ +++Y+
Sbjct: 299 RYLRKKTNCDKWYNEHEHQRDPAYAIRTALTRGVRLLCTEPIVQAFCMYLVFINILLYI 357


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
           precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 285 KTLWRTISKISNPLYIPTSADVAGTTFSCWLLI 187
           KT +  + K +NP++  TS  V G     WL++
Sbjct: 18  KTAFSYVIKRNNPVFDYTSEKVRGVNIGGWLVL 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,909
Number of Sequences: 5004
Number of extensions: 53221
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)