Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0297.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...    51   8e-07
06_03_1222 - 28521799-28521900,28521952-28522029,28522292-285243...    28   6.5  
06_03_1214 + 28469848-28473048                                         28   6.5  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 21/84 (25%), Positives = 51/84 (60%)
 Frame = -1

Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
           P  +++++S  +  L + +     +++ +++L+ K++LPEGS  I +++P+  T+    +
Sbjct: 338 PLQDFVFNSDGKRFLNI-TFGSPVEEILIEKLIVKVVLPEGSKDIDISVPFP-TKQEQEV 395

Query: 337 HFTYLDTKGRPVISFIKKNIVENH 266
            +++LD  GRPV+   K +++  H
Sbjct: 396 KYSHLDISGRPVVVLEKLDVIPEH 419



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 16/43 (37%), Positives = 29/43 (67%)
 Frame = -3

Query: 257 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHKS 129
           FQ+ Y F  + +L+EP++++   + LF+  I+Y+R D SI K+
Sbjct: 423 FQVYYRFNNISLLREPMMLITGFFLLFMACIVYMRTDMSISKN 465



 Score = 34.7 bits (76), Expect = 0.057
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -3

Query: 587 KLDLRPRYPLFXGWRTHYTLG 525
           +L++ PR+PLF GW+T +T+G
Sbjct: 314 QLEVEPRFPLFGGWQTTFTIG 334


>06_03_1222 -
           28521799-28521900,28521952-28522029,28522292-28524335,
           28525188-28525303
          Length = 779

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 475 LKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 350
           L    +  + D   + +LV   +L  GSTG+  NIP S+ +L
Sbjct: 265 LPSNDLQGVLDGSDILKLVKLTVLDLGSTGLSGNIPDSIGQL 306


>06_03_1214 + 28469848-28473048
          Length = 1066

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 475 LKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 350
           L    +  + D   + +LV   +L  GSTG+  NIP S+ +L
Sbjct: 268 LPNNDLQGVLDGSHIVKLVKLTVLDLGSTGLSGNIPDSIGQL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,433
Number of Sequences: 37544
Number of extensions: 288502
Number of successful extensions: 601
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)