Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0297.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)              84   7e-17
SB_5017| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.93 
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)              28   6.6  
SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18)              28   6.6  
SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)                 28   6.6  
SB_47892| Best HMM Match : WCCH (HMM E-Value=3.3)                      27   8.7  

>SB_54864| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 84.2 bits (199), Expect = 7e-17
 Identities = 36/72 (50%), Positives = 48/72 (66%)
 Frame = -1

Query: 469 MRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFI 290
           + S DHIFDD  +D++  ++ILPEG+  IKL  P+ +      L FTYLDT GRPV+   
Sbjct: 269 LHSSDHIFDDFVIDQMTPEVILPEGARDIKLKTPFPINEGKRELQFTYLDTVGRPVVVAH 328

Query: 289 KKNIVENHIQDF 254
           K N++E HIQDF
Sbjct: 329 KTNVIEQHIQDF 340



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = -3

Query: 257 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHK 132
           F ++YTF ++++LQEPLL+VG  Y LFL VIIYVR+DFSI K
Sbjct: 340 FALQYTFNKVMLLQEPLLIVGAFYLLFLLVIIYVRMDFSISK 381



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = -3

Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
           +SV+L+LRPR+PLF GW+T Y +G
Sbjct: 237 ESVELELRPRFPLFGGWQTRYLIG 260


>SB_5017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 346 DSLHFTYLDTKGRPVISFIKKNIVENHIQDFK 251
           D LH ++LD  G  VI  IK+N+V   ++ F+
Sbjct: 127 DRLHCSFLDEDGNDVILAIKENLVMKKLRSFR 158


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 396 VLQGSS*TYLIVSQDCQTVCTSHT 325
           V QG   T L V+QDCQ    SHT
Sbjct: 665 VTQGGQVTQLAVTQDCQVTTRSHT 688


>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -1

Query: 433 VDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDF 254
           +D+L  +I +P   T + L + Y+ T L D L FT+     +  +  +++ +V+  + DF
Sbjct: 231 LDDLKFEIDIPFWLTVMFLYLKYA-TSLVDPLLFTFFKEDFQRALKSLRRRVVDEWVSDF 289

Query: 253 K 251
           +
Sbjct: 290 Q 290


>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
          Length = 691

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 44  DNYHQKCTLT-RCVKSGNNMFHYKFNLYVQTCELK 145
           DNY+++C LT  CV + N    Y+F  Y  T E K
Sbjct: 421 DNYNKECDLTVGCVSNANGE-SYEFRTYNMTQEKK 454


>SB_54530| Best HMM Match : Collagen (HMM E-Value=1.9e-18)
          Length = 427

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = -1

Query: 457 DHIFDDMQVDELVTKIILPEGSTGIKLNIPYSV--TRLPDSLHFTYLDTKGRPVI 299
           DH F + + D+L  + +LP+G   + L +      TR P S + T +D  GR  I
Sbjct: 362 DHPFPEYRHDQLDGQCVLPQGRVNVGLWVEDCTGHTRSPKS-NITLVDMSGRMFI 415


>SB_11641| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-33)
          Length = 390

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 234 TSADVAGTTFSCWLLIYIVFVCYYLCKIRFFNSQ 133
           T A V G    CW   +++FV +  C    F  +
Sbjct: 290 TLAVVVGVFILCWFPFFVIFVTFQYCDTECFGEE 323


>SB_47892| Best HMM Match : WCCH (HMM E-Value=3.3)
          Length = 136

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 379 LNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFKSVIHSHVC 227
           +N+P+  TRL  +++  +  T+      +  +  VEN +    S+IH H C
Sbjct: 1   MNLPHCTTRLKVNMNSPHCTTRLEASRRYQHRRSVENVLIFNGSLIHKHRC 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,208,471
Number of Sequences: 59808
Number of extensions: 374714
Number of successful extensions: 721
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)