Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0297.Seq
(598 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 120 4e-27
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 120 4e-27
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 120 4e-27
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 120 4e-27
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 120 4e-27
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 120 bits (289), Expect = 4e-27
Identities = 53/93 (56%), Positives = 69/93 (74%)
Frame = -1
Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
P EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD L
Sbjct: 337 PSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDEL 396
Query: 337 HFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
H+TYLDT GRPVI KKN+VE HIQD V+H
Sbjct: 397 HYTYLDTFGRPVIVAYKKNLVEQHIQDI--VVH 427
Score = 59.7 bits (138), Expect = 8e-09
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = -3
Query: 299 LVYKEKHCGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHK 132
+ YK+ + + YTF ++LMLQEPLLVV Y LF VIIYVRLDFSI K
Sbjct: 410 VAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK 465
Score = 45.2 bits (102), Expect = 2e-04
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -3
Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
DSV++++RPR+PLF GW+THY +G
Sbjct: 310 DSVEMEIRPRFPLFGGWKTHYIVG 333
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 120 bits (289), Expect = 4e-27
Identities = 53/93 (56%), Positives = 69/93 (74%)
Frame = -1
Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
P EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD L
Sbjct: 337 PSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDEL 396
Query: 337 HFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
H+TYLDT GRPVI KKN+VE HIQD V+H
Sbjct: 397 HYTYLDTFGRPVIVAYKKNLVEQHIQDI--VVH 427
Score = 59.7 bits (138), Expect = 8e-09
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = -3
Query: 299 LVYKEKHCGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHK 132
+ YK+ + + YTF ++LMLQEPLLVV Y LF VIIYVRLDFSI K
Sbjct: 410 VAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK 465
Score = 45.2 bits (102), Expect = 2e-04
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -3
Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
DSV++++RPR+PLF GW+THY +G
Sbjct: 310 DSVEMEIRPRFPLFGGWKTHYIVG 333
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 120 bits (289), Expect = 4e-27
Identities = 53/93 (56%), Positives = 69/93 (74%)
Frame = -1
Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
P EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD L
Sbjct: 337 PSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDEL 396
Query: 337 HFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
H+TYLDT GRPVI KKN+VE HIQD V+H
Sbjct: 397 HYTYLDTFGRPVIVAYKKNLVEQHIQDI--VVH 427
Score = 59.7 bits (138), Expect = 8e-09
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = -3
Query: 299 LVYKEKHCGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHK 132
+ YK+ + + YTF ++LMLQEPLLVV Y LF VIIYVRLDFSI K
Sbjct: 410 VAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK 465
Score = 45.2 bits (102), Expect = 2e-04
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -3
Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
DSV++++RPR+PLF GW+THY +G
Sbjct: 310 DSVEMEIRPRFPLFGGWKTHYIVG 333
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 120 bits (289), Expect = 4e-27
Identities = 53/93 (56%), Positives = 69/93 (74%)
Frame = -1
Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
P EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD L
Sbjct: 298 PSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDEL 357
Query: 337 HFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
H+TYLDT GRPVI KKN+VE HIQD V+H
Sbjct: 358 HYTYLDTFGRPVIVAYKKNLVEQHIQDI--VVH 388
Score = 59.7 bits (138), Expect = 8e-09
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = -3
Query: 299 LVYKEKHCGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHK 132
+ YK+ + + YTF ++LMLQEPLLVV Y LF VIIYVRLDFSI K
Sbjct: 371 VAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK 426
Score = 45.2 bits (102), Expect = 2e-04
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -3
Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
DSV++++RPR+PLF GW+THY +G
Sbjct: 271 DSVEMEIRPRFPLFGGWKTHYIVG 294
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 120 bits (289), Expect = 4e-27
Identities = 53/93 (56%), Positives = 69/93 (74%)
Frame = -1
Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
P EYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD L
Sbjct: 337 PSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDEL 396
Query: 337 HFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
H+TYLDT GRPVI KKN+VE HIQD V+H
Sbjct: 397 HYTYLDTFGRPVIVAYKKNLVEQHIQDI--VVH 427
Score = 59.7 bits (138), Expect = 8e-09
Identities = 30/56 (53%), Positives = 36/56 (64%)
Frame = -3
Query: 299 LVYKEKHCGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHK 132
+ YK+ + + YTF ++LMLQEPLLVV Y LF VIIYVRLDFSI K
Sbjct: 410 VAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVRLDFSITK 465
Score = 45.2 bits (102), Expect = 2e-04
Identities = 15/24 (62%), Positives = 22/24 (91%)
Frame = -3
Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
DSV++++RPR+PLF GW+THY +G
Sbjct: 310 DSVEMEIRPRFPLFGGWKTHYIVG 333
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,859,212
Number of Sequences: 237096
Number of extensions: 1816949
Number of successful extensions: 6440
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6440
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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