Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0297.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    91   7e-19
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    32   0.27 
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    32   0.27 
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    32   0.27 
U80454-4|AAB37876.3|  896|Caenorhabditis elegans Prion-like-(q/n...    31   0.82 

>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 42/85 (49%), Positives = 58/85 (68%)
 Frame = -1

Query: 508 EYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFT 329
           EYLY  GN+Y LK +  DH+F+D+ V++L TK++LPE    +K+  PY+V R P+ L  T
Sbjct: 323 EYLYSKGNQYALKTKLFDHVFNDIVVEKLRTKVLLPEHVKRVKVATPYAVDRRPEELKPT 382

Query: 328 YLDTKGRPVISFIKKNIVENHIQDF 254
           YLDT GR V+   K+NIV +H Q F
Sbjct: 383 YLDTTGRLVLVLEKENIVPDHSQFF 407



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 20/47 (42%), Positives = 28/47 (59%)
 Frame = -3

Query: 257 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHKSEHKD 117
           F + Y F  + ML+EPLL   F ++LF  +I+Y R DF+I     KD
Sbjct: 407 FTVTYEFEFVDMLREPLLASAFFFSLFFVIIVYSRFDFTISSDPAKD 453



 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 14/24 (58%), Positives = 20/24 (83%)
 Frame = -3

Query: 596 DSVKLDLRPRYPLFXGWRTHYTLG 525
           DSV +++RPR+PLF GW+T Y +G
Sbjct: 293 DSVDVEIRPRFPLFGGWKTSYVIG 316


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical
           protein F18C12.2b protein.
          Length = 2271

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 376 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
           N+PYS  R   S    + + KG+ +++ I+  ++EN+ +D K   H
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKDDKEYKH 429


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical
           protein F18C12.2a protein.
          Length = 2279

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 376 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
           N+PYS  R   S    + + KG+ +++ I+  ++EN+ +D K   H
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKDDKEYKH 429


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
           protein RME-8 protein.
          Length = 2279

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = -1

Query: 376 NIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFKSVIH 239
           N+PYS  R   S    + + KG+ +++ I+  ++EN+ +D K   H
Sbjct: 384 NVPYSGLRFSKSHEGFFSENKGKVIVNAIEAVLMENYTKDDKEYKH 429


>U80454-4|AAB37876.3|  896|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 66
           protein.
          Length = 896

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 273 RTISKISNPLYIPTSADVAGTTFSCWLLIYIVFVCYYLCKIRFFNS 136
           +TI    N + I  S +++   F  + L YI+   Y LC+  F++S
Sbjct: 262 KTIKHTLNWVIIKVSKEISFNFFQTFRLAYILMFAYMLCRYPFYSS 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,417
Number of Sequences: 27780
Number of extensions: 296177
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)