Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0297.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.98 
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -3

Query: 278 CGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIY 159
           C EPYP      T  R  +     L++  +   FL V+++
Sbjct: 219 CEEPYPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLVF 258


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 248 GFEILDMVLHNVFLYKRDYWTTF 316
           G  +LDM L  ++  + D+ TTF
Sbjct: 52  GENMLDMDLRGIYSNRTDFTTTF 74


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 278 CGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIY 159
           C EPYP      T  R  +     L+V  +   +L V+ +
Sbjct: 218 CDEPYPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAF 257


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -3

Query: 278 CGEPYPRFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIY 159
           C EPY       T  R  +     L++  +   FL V+++
Sbjct: 232 CTEPYSDITFNITMRRKTLFYTVNLIIPCVGITFLTVLVF 271


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 583 WISDLDILCLXAGEXIT 533
           W S   I+CL AG+ ++
Sbjct: 285 WYSPFGIMCLIAGKIMS 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,812
Number of Sequences: 438
Number of extensions: 3688
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)