Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0297.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76400.1 68414.m08878 ribophorin I family protein similar to ...    52   3e-07
At2g01720.1 68415.m00100 ribophorin I family protein similar to ...    42   3e-04
At4g32820.1 68417.m04668 expressed protein ; expression supporte...    27   9.5  

>At1g76400.1 68414.m08878 ribophorin I family protein similar to
           ribophorin I [Sus scrofa] GI:9857227; contains Pfam
           profile PF04597: Ribophorin I
          Length = 614

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 49/86 (56%)
 Frame = -1

Query: 517 P*LEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSL 338
           P  ++L+ S  +  L +     I D +  ++L+ +++LPEGS  I +  P++V +    +
Sbjct: 337 PLTDFLFASEGKRFLNISFGSPILD-LVTEKLIVQVVLPEGSKDISVTTPFAV-KQSQEI 394

Query: 337 HFTYLDTKGRPVISFIKKNIVENHIQ 260
            +++LD  GRPV+   K N+V +H Q
Sbjct: 395 KYSHLDIAGRPVVVLEKNNVVPDHNQ 420



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -3

Query: 254 QIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSIHKS 129
           Q+ Y F  + +L EPL+++   + LF+  IIY R D SI KS
Sbjct: 423 QVYYKFSNINLLSEPLMLISGFFILFITCIIYTRADISISKS 464



 Score = 34.3 bits (75), Expect = 0.063
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 596 DSVKLDL--RPRYPLFXGWRTHYTLG 525
           DS K +L   PR+PLF GW+T +T+G
Sbjct: 308 DSKKTELLIEPRFPLFGGWKTFFTIG 333


>At2g01720.1 68415.m00100 ribophorin I family protein similar to
           SP|P04843 Dolichyl-diphosphooligosaccharide--protein
           glycosyltransferase 67 kDa subunit precursor (EC
           2.4.1.119) (Ribophorin I) {Homo sapiens}; contains Pfam
           profile PF04597: Ribophorin I
          Length = 464

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 35/61 (57%)
 Frame = -1

Query: 433 VDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDF 254
           V++L  K++LPEGS      +P++V +    + ++YLD  GR V+   K N+V  H   F
Sbjct: 364 VNKLTIKVVLPEGSKDPSAVLPFTVNQ-ELQVKYSYLDIVGRTVVVLQKDNVVPTHNVPF 422

Query: 253 K 251
           +
Sbjct: 423 Q 423



 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 257 FQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVRLDFSI 138
           FQ+ YTF  + ML EP ++V   + +F+  + YV +D +I
Sbjct: 422 FQVYYTFKPIYMLAEPFMLVSAFFLVFVASLAYVHIDLNI 461



 Score = 30.7 bits (66), Expect = 0.77
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 587 KLDLRPRYPLFXGWRTHYTLG 525
           +L+  PRYPLF GW   + +G
Sbjct: 312 ELEFEPRYPLFGGWSATFIIG 332


>At4g32820.1 68417.m04668 expressed protein ; expression supported by
            MPSS
          Length = 1817

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -1

Query: 346  DSLHFTYLDTKGRPVISFIKKNIVENHIQDFKSVIHSHVC*CCRNHF 206
            D L    L+ K RPV+S IK  ++ N + +    I + +   C N F
Sbjct: 1641 DPLESQMLEAKWRPVLSKIKNVLIFNKVVEGNLEIANSLLKSCYNFF 1687


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,791,282
Number of Sequences: 28952
Number of extensions: 258643
Number of successful extensions: 586
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)