Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q94522 Cluster: Succinyl-CoA ligase [GDP-forming] subun...    50   3e-05
UniRef50_Q0PQK3 Cluster: Succinyl-CoA synthetase alpha subunit; ...    36   0.96 
UniRef50_Q8I2P3 Cluster: Putative uncharacterized protein PFI130...    34   2.9  
UniRef50_P53400 Cluster: Succinyl-CoA ligase [GDP-forming] subun...    33   3.9  
UniRef50_Q705E0 Cluster: Y protein; n=1; Human papillomavirus - ...    33   5.1  
UniRef50_P53597 Cluster: Succinyl-CoA ligase [GDP-forming] subun...    33   5.1  
UniRef50_Q8IBC6 Cluster: Putative uncharacterized protein MAL8P1...    32   8.9  
UniRef50_Q7RSV2 Cluster: Putative uncharacterized protein PY0025...    32   8.9  
UniRef50_Q4YAC6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_Q94522 Cluster: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor; n=81; cellular
           organisms|Rep: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor - Drosophila melanogaster
           (Fruit fly)
          Length = 328

 Score = 50.4 bits (115), Expect = 3e-05
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = -2

Query: 510 LEKANVIVTRSPAKMGVELHKEMKRLEII 424
           LEKA VIVTRSPAKMG EL KEMKRLE++
Sbjct: 300 LEKAGVIVTRSPAKMGHELFKEMKRLELV 328



 Score = 33.9 bits (74), Expect = 2.9
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAK 536
           PPG RMGHAGAIIS  K
Sbjct: 274 PPGRRMGHAGAIISGGK 290


>UniRef50_Q0PQK3 Cluster: Succinyl-CoA synthetase alpha subunit;
           n=1; Endoriftia persephone 'Hot96_1+Hot96_2'|Rep:
           Succinyl-CoA synthetase alpha subunit - Endoriftia
           persephone 'Hot96_1+Hot96_2'
          Length = 144

 Score = 35.5 bits (78), Expect = 0.96
 Identities = 19/43 (44%), Positives = 22/43 (51%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRKS*CNRHSVSGQNGRG 458
           PPG RMGHAGAIIS  K     K    ++    H V   +G G
Sbjct: 60  PPGKRMGHAGAIISGGKGTANAKFEALEA-AGAHVVRSPSGDG 101


>UniRef50_Q8I2P3 Cluster: Putative uncharacterized protein PFI1305w;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein PFI1305w - Plasmodium falciparum
            (isolate 3D7)
          Length = 1327

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = -3

Query: 353  YIAIIYFRLLLQFVLYCYFAIPETY*YFHKNIILISYIHISTRLSFI*QCFIGLVEIAIA 174
            YI   Y R+ LQ ++   F +P       KN   I  +HI + L+ +   F G+++I  +
Sbjct: 1175 YIPFTYIRISLQLIINIIFCLPSM---IIKNFKRIKMLHIFSILNCLVNIFFGMIDIVYS 1231

Query: 173  CTNSIVHL 150
              + I ++
Sbjct: 1232 LNDRIFNI 1239


>UniRef50_P53400 Cluster: Succinyl-CoA ligase [GDP-forming] subunit
           alpha-2, mitochondrial precursor; n=34; cellular
           organisms|Rep: Succinyl-CoA ligase [GDP-forming] subunit
           alpha-2, mitochondrial precursor - Trichomonas vaginalis
          Length = 309

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAK 536
           PPG RMGHAGAI+S  K
Sbjct: 255 PPGKRMGHAGAIVSGGK 271


>UniRef50_Q705E0 Cluster: Y protein; n=1; Human papillomavirus -
           81|Rep: Y protein - Human papillomavirus - 81
          Length = 107

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -2

Query: 372 CIVF*LLYCYYLFSIVVTICLVLLFCDS*DILIFS*KYNINLVHTYINQIEFYI 211
           CIV   LY       VV IC++   C     L+F   +N+ +V+T +N +  Y+
Sbjct: 13  CIVLCCLYYMCFVCCVVFICVLYACCPFAPTLLFVYLWNVCVVYTLLNCVSHYV 66


>UniRef50_P53597 Cluster: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor; n=313; cellular
           organisms|Rep: Succinyl-CoA ligase [GDP-forming] subunit
           alpha, mitochondrial precursor - Homo sapiens (Human)
          Length = 333

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRKS 500
           PPG RMGHAGAII+  K     K+   +S
Sbjct: 279 PPGRRMGHAGAIIAGGKGGAKEKISALQS 307


>UniRef50_Q8IBC6 Cluster: Putative uncharacterized protein MAL8P1.7;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL8P1.7 - Plasmodium falciparum
            (isolate 3D7)
          Length = 2130

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 35/126 (27%), Positives = 56/126 (44%)
 Frame = +3

Query: 6    FFSTIQANHKYDTHYSTSKRILHLKVGKLYL*Q*LSYRIFNK*IRLSHKVHYRIRACYSN 185
            FF+ I   + Y  +Y     I  + +   YL +       NK    +HK+ Y I+  ++ 
Sbjct: 1153 FFTKIIFINIYHIYYKNYYYIYIITINMKYLDR------INKSPNDNHKIRYIIKYIHTY 1206

Query: 186  FNKTNKALLYKTQSG*YMYVRD*YYIFMKISICLRNRKITIQDKL*QQSKINNSNIVTKT 365
              KTNK  +++  +    Y R   +I  KISIC++N+K    + L     I   N +   
Sbjct: 1207 IIKTNK--IHRHLNKVIFYKRR--FIKKKISICIQNKKKKKMNIL----SIMKFNYIHDD 1258

Query: 366  LYKSGS 383
            LYK  S
Sbjct: 1259 LYKKNS 1264


>UniRef50_Q7RSV2 Cluster: Putative uncharacterized protein PY00251;
            n=4; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY00251 - Plasmodium yoelii yoelii
          Length = 1026

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 338  YFRLLLQFVLYCYFAIPETY*YFHKNIILISYIHISTRLSFI*QCFIGLVEIAIACTNSI 159
            Y R+L+Q  +    AIP    +  KN   I  +HI + L+ I   F G+++I  +  N I
Sbjct: 844  YIRILIQLGINILLAIPS---FIIKNSRSIKILHICSILNCIVNIFFGMMDITYSLNNKI 900


>UniRef50_Q4YAC6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 71

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -2

Query: 408 LKMCKRVRSNHSCIVF*LLYCYYLFSIVVTICLVLLFCDS*DILIFS*KYNINL-VHTYI 232
           ++ CK   S  S I+   ++CYY+F         +  C+S +I+I    ++I+L +  Y+
Sbjct: 1   MQKCKPFLSPISIIMMMFIHCYYIFDPPPHFFYNV--CNSFEIIILPHSFSISLALKHYL 58

Query: 231 NQIEFYITMLY 199
           + ++ YI  LY
Sbjct: 59  SYLQKYINTLY 69


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,933,498
Number of Sequences: 1657284
Number of extensions: 10987399
Number of successful extensions: 22322
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22298
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)