Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    29   0.52 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    25   6.3  

>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAK 536
           P G RMGHAGAI++  K
Sbjct: 278 PKGRRMGHAGAIVAGGK 294


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 351 YCYYLFSIVVTICLVLLF 298
           + +YLF+IV+T C+  +F
Sbjct: 543 FIFYLFTIVITFCMSAVF 560


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/63 (26%), Positives = 30/63 (47%)
 Frame = -3

Query: 365  CFSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKNIILISYIHISTRLSFI*QCFIGLVE 186
            CF     ++Y       VL  +  I E Y   H+N++   Y+H+S +L F    +I  +E
Sbjct: 861  CFKTTSLVLYSHTSQFAVLREFQEIAEKY--HHQNLLSCYYLHLSKKL-FEESAYIDALE 917

Query: 185  IAI 177
             ++
Sbjct: 918  FSL 920


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,946
Number of Sequences: 5004
Number of extensions: 48957
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)