Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1015 + 23307700-23307906,23309274-23309483,23309915-233100...    35   0.057
12_01_0272 + 1985348-1986036,1986142-1988020                           29   2.8  
11_01_0271 + 2039100-2041760                                           29   2.8  

>07_03_1015 +
           23307700-23307906,23309274-23309483,23309915-23310085,
           23310163-23310286,23310753-23310814,23311185-23311266,
           23311870-23312009
          Length = 331

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLR 512
           PPG RMGHAGAI+S  K     K++
Sbjct: 276 PPGRRMGHAGAIVSGGKGTAQDKIK 300



 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/29 (55%), Positives = 16/29 (55%)
 Frame = -3

Query: 596 LXAPPGSTNGSRWCHHFGGKGGAMDKIKA 510
           L APPG   G       GGKG A DKIKA
Sbjct: 273 LTAPPGRRMGHAGAIVSGGKGTAQDKIKA 301


>12_01_0272 + 1985348-1986036,1986142-1988020
          Length = 855

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 94  TYNNNYLIEFLTNESAYLIRCTI-EFVHAIAISTRPIKHCYIKLNLV 231
           TY+  Y++ F +N +A++    I   + +  IST+ IK+C +++ ++
Sbjct: 379 TYHRRYMVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMI 425


>11_01_0271 + 2039100-2041760
          Length = 886

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 94  TYNNNYLIEFLTNESAYLIRCTI-EFVHAIAISTRPIKHCYIKLNLV 231
           TY+  Y++ F +N +A++    I   + +  IST+ IK+C +++ ++
Sbjct: 414 TYHRRYMVFFYSNATAFIASLVILILLLSNMISTQGIKYCALQVAMI 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,959
Number of Sequences: 37544
Number of extensions: 280102
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)