Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  31   0.93 
SB_36529| Best HMM Match : K_tetra (HMM E-Value=2e-24)                 28   6.6  
SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)             28   6.6  
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_18488| Best HMM Match : CRAL_TRIO_N (HMM E-Value=3.5)               27   8.7  

>SB_54338| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 445

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAK 536
           P G RMGHAGAIIS  K
Sbjct: 136 PKGKRMGHAGAIISGGK 152


>SB_36529| Best HMM Match : K_tetra (HMM E-Value=2e-24)
          Length = 279

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 100 NNNYLIE--FLTNESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDI 237
           N+N L    ++  E A  I  TIE +  +A +   IK C   LN+VDI
Sbjct: 182 NSNVLATNVYVIIEMACYIWFTIELIFRLASAPEKIKFCKQPLNVVDI 229


>SB_32476| Best HMM Match : Ion_trans (HMM E-Value=1.7e-36)
          Length = 454

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +1

Query: 100 NNNYLIE--FLTNESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDI 237
           N+N L    ++  E A  I  TIE +  +A +   IK C   LN+VDI
Sbjct: 182 NSNVLATNVYVIIEMACYIWFTIELIFRLASAPEKIKFCKQPLNVVDI 229


>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 353 YIAIIYFRLLLQFVLYCYFAIPET 282
           Y  I++  L+L F L+ YF +PET
Sbjct: 6   YTFIVFLVLVLGFWLFTYFLVPET 29


>SB_18488| Best HMM Match : CRAL_TRIO_N (HMM E-Value=3.5)
          Length = 453

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRK 503
           PP  R GHAG + +  + A W ++   K
Sbjct: 256 PPATRPGHAGRVEAGRRLAKWNRINRAK 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,785,308
Number of Sequences: 59808
Number of extensions: 343773
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)