Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    24   3.2  
AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic acetylch...    24   3.2  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    24   4.3  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.3  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.3  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   4.3  
AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    24   4.3  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    23   9.9  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   9.9  
AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.     23   9.9  

>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 306 IQDKL*QQSKINNSNIVTKTLYKSGST*RVYTFLRNVKF 422
           +Q +L Q+S++ +SN+ + T  ++    ++   L  VKF
Sbjct: 78  LQQQLLQKSRLKSSNLKSTTYTRNTENDKLTRHLNTVKF 116


>AY705404-1|AAU12513.1|  406|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 9 protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 244 TYIYQPD*VLYNNA 203
           T +++PD VLYNNA
Sbjct: 116 TIVWRPDVVLYNNA 129


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 363 F*LLYCYYLFSIVVTICLVL 304
           F L +C++LF IV+ + L+L
Sbjct: 708 FWLFHCHFLFHIVIGMNLIL 727


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 241 YIYQPD*VLYNNA 203
           +I++PD VLYNNA
Sbjct: 108 HIWRPDIVLYNNA 120


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 241 YIYQPD*VLYNNA 203
           +I++PD VLYNNA
Sbjct: 108 HIWRPDIVLYNNA 120


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -1

Query: 241 YIYQPD*VLYNNA 203
           +I++PD VLYNNA
Sbjct: 104 HIWRPDIVLYNNA 116


>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 199 IKHCYIKLNLVDICMYE 249
           + HCY+K  L  + MY+
Sbjct: 66  VTHCYVKCTLAGLQMYD 82


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 241 YIYQPD*VLYNNA 203
           +I+ PD VLYNNA
Sbjct: 116 HIWLPDIVLYNNA 128


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 241 YIYQPD*VLYNNA 203
           +I+ PD VLYNNA
Sbjct: 104 HIWLPDIVLYNNA 116


>AJ130949-1|CAA10258.1|  401|Anopheles gambiae SG1 protein protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 9   FSTIQANHKYDTHYSTSKRIL 71
           F+T  AN  YD +   SK+I+
Sbjct: 380 FATRDANRDYDHYLQESKKII 400


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 620,591
Number of Sequences: 2352
Number of extensions: 11247
Number of successful extensions: 57
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)