Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457139-1|CAG33420.1|  333|Homo sapiens SUCLG1 protein.               33   0.77 
BC000504-1|AAH00504.1|  333|Homo sapiens SUCLG1 protein protein.       33   0.77 
AF104921-1|AAD17940.2|  333|Homo sapiens succinyl-CoA synthetase...    33   0.77 
AC096770-1|AAY24107.1|  333|Homo sapiens unknown protein.              33   0.77 

>CR457139-1|CAG33420.1|  333|Homo sapiens SUCLG1 protein.
          Length = 333

 Score = 33.1 bits (72), Expect = 0.77
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRKS 500
           PPG RMGHAGAII+  K     K+   +S
Sbjct: 279 PPGRRMGHAGAIIAGGKGGAKEKISALQS 307



 Score = 29.9 bits (64), Expect = 7.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 596 LXAPPGSTNGSRWCHHFGGKGGAMDKIKA 510
           L APPG   G       GGKGGA +KI A
Sbjct: 276 LTAPPGRRMGHAGAIIAGGKGGAKEKISA 304



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 LEKANVIVTRSPAKMGVELHKEMKRLEII 424
           L+ A V+V+ SPA++G  ++KE ++ +++
Sbjct: 305 LQSAGVVVSMSPAQLGTTIYKEFEKRKML 333


>BC000504-1|AAH00504.1|  333|Homo sapiens SUCLG1 protein protein.
          Length = 333

 Score = 33.1 bits (72), Expect = 0.77
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRKS 500
           PPG RMGHAGAII+  K     K+   +S
Sbjct: 279 PPGRRMGHAGAIIAGGKGGAKEKISALQS 307



 Score = 29.9 bits (64), Expect = 7.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 596 LXAPPGSTNGSRWCHHFGGKGGAMDKIKA 510
           L APPG   G       GGKGGA +KI A
Sbjct: 276 LTAPPGRRMGHAGAIIAGGKGGAKEKISA 304



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 LEKANVIVTRSPAKMGVELHKEMKRLEII 424
           L+ A V+V+ SPA++G  ++KE ++ +++
Sbjct: 305 LQSAGVVVSMSPAQLGTTIYKEFEKRKML 333


>AF104921-1|AAD17940.2|  333|Homo sapiens succinyl-CoA synthetase
           alpha subunit protein.
          Length = 333

 Score = 33.1 bits (72), Expect = 0.77
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRKS 500
           PPG RMGHAGAII+  K     K+   +S
Sbjct: 279 PPGRRMGHAGAIIAGGKGGAKEKISALQS 307



 Score = 29.9 bits (64), Expect = 7.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 596 LXAPPGSTNGSRWCHHFGGKGGAMDKIKA 510
           L APPG   G       GGKGGA +KI A
Sbjct: 276 LTAPPGRRMGHAGAIIAGGKGGAKEKISA 304



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 LEKANVIVTRSPAKMGVELHKEMKRLEII 424
           L+ A V+V+ SPA++G  ++KE ++ +++
Sbjct: 305 LQSAGVVVSMSPAQLGTTIYKEFEKRKML 333


>AC096770-1|AAY24107.1|  333|Homo sapiens unknown protein.
          Length = 333

 Score = 33.1 bits (72), Expect = 0.77
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKLRLRKS 500
           PPG RMGHAGAII+  K     K+   +S
Sbjct: 279 PPGRRMGHAGAIIAGGKGGAKEKISALQS 307



 Score = 29.9 bits (64), Expect = 7.2
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -3

Query: 596 LXAPPGSTNGSRWCHHFGGKGGAMDKIKA 510
           L APPG   G       GGKGGA +KI A
Sbjct: 276 LTAPPGRRMGHAGAIIAGGKGGAKEKISA 304



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = -2

Query: 510 LEKANVIVTRSPAKMGVELHKEMKRLEII 424
           L+ A V+V+ SPA++G  ++KE ++ +++
Sbjct: 305 LQSAGVVVSMSPAQLGTTIYKEFEKRKML 333


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,616,686
Number of Sequences: 237096
Number of extensions: 1607557
Number of successful extensions: 1995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)