Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0296.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical pr...    34   0.088
AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical ...    33   0.15 
AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical ...    31   0.62 
AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical ...    31   0.62 
AL110485-22|CAB60371.1|  399|Caenorhabditis elegans Hypothetical...    29   3.3  
Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical pr...    28   4.4  
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   4.4  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   4.4  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   4.4  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   4.4  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   4.4  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   4.4  
Z29115-4|CAA82364.1|  125|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z70203-4|CAA94107.1|  322|Caenorhabditis elegans Hypothetical
           protein C05G5.4 protein.
          Length = 322

 Score = 33.9 bits (74), Expect = 0.088
 Identities = 14/17 (82%), Positives = 14/17 (82%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAK 536
           PPG RMGHAGAIIS  K
Sbjct: 270 PPGRRMGHAGAIISGGK 286


>AF003389-2|AAC71132.1|  321|Caenorhabditis elegans Hypothetical
           protein F23H11.3 protein.
          Length = 321

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -1

Query: 586 PPGXRMGHAGAIISAAKEAPWTKL 515
           PPG RMGHAGAII+  K     K+
Sbjct: 271 PPGRRMGHAGAIIAGGKGTAGDKI 294



 Score = 31.1 bits (67), Expect = 0.62
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = -2

Query: 510 LEKANVIVTRSPAKMGVELHKEM 442
           L  ANV+VT SPAK+GV + K +
Sbjct: 297 LRNANVVVTDSPAKLGVAMQKAL 319


>AC006762-8|AAP31426.1|  295|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3b protein.
          Length = 295

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 115 IEFLTN-ESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDICMYEINIIFL*KYQYVSG 291
           ++ L N E  YL    +E+V  + ++ R +K  ++  N +D C   I+++ L +  Y+ G
Sbjct: 125 LQLLENLEHLYLSGNRLEYVPPVILTMRKLKTLHLGGNYIDSCPSNISVLTLLRVLYLGG 184


>AC006762-7|AAF60555.1|  375|Caenorhabditis elegans Hypothetical
           protein Y42G9A.3a protein.
          Length = 375

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +1

Query: 115 IEFLTN-ESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDICMYEINIIFL*KYQYVSG 291
           ++ L N E  YL    +E+V  + ++ R +K  ++  N +D C   I+++ L +  Y+ G
Sbjct: 125 LQLLENLEHLYLSGNRLEYVPPVILTMRKLKTLHLGGNYIDSCPSNISVLTLLRVLYLGG 184


>AL110485-22|CAB60371.1|  399|Caenorhabditis elegans Hypothetical
           protein Y46G5A.28 protein.
          Length = 399

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 106 NYLIEFLTNESAYLIRCTIEFVHAIAISTRPIKHCYIKLNLVDI 237
           +YL  FL N   Y++ CT++F+  + I+    K  +++  L ++
Sbjct: 331 SYLKGFLENGDDYMVSCTLKFLLGMPITLSQFKTSHVEACLENL 374


>Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical
           protein C43C3.2 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 404 KCVNALGRTTLV*CFSYYIAIIYFRLLLQFVLYCYF 297
           KCV+ LGR   V  F+ Y  ++ + + L F++Y Y+
Sbjct: 249 KCVDDLGRELFV-VFTLYSFVLAYLMPLLFMIYFYY 283


>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 362 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 261
           FS +I+II+   LL F+L+CY  I   + + H N
Sbjct: 122 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 152


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 362 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 261
           FS +I+II+   LL F+L+CY  I   + + H N
Sbjct: 122 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 152


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 362 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 261
           FS +I+II+   LL F+L+CY  I   + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 362 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 261
           FS +I+II+   LL F+L+CY  I   + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 362 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 261
           FS +I+II+   LL F+L+CY  I   + + H N
Sbjct: 180 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 210


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 362 FSYYIAIIYFRLLLQFVLYCYFAIPETY*YFHKN 261
           FS +I+II+   LL F+L+CY  I   + + H N
Sbjct: 152 FSVFISIIH---LLSFLLHCYQLIDNFFPFLHLN 182


>Z29115-4|CAA82364.1|  125|Caenorhabditis elegans Hypothetical
           protein T26G10.5 protein.
          Length = 125

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -3

Query: 359 SYYIAIIYFR--LLLQFVLYCYFAIPE-TY*YFHKN 261
           SYYI I+ FR  LL+ F++ C+  + E ++ + H++
Sbjct: 36  SYYIKIMMFRLFLLISFIVLCHSIVSEISHRFLHRD 71


>U80847-2|AAB37982.2|  475|Caenorhabditis elegans Hypothetical
           protein C17H11.1 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 7   SFQPYRQITNTIHITVHLSEYYI*K*VNSTYNNNYLI 117
           +FQ YR  +NT+ +  H   +Y+    +S Y   +L+
Sbjct: 332 NFQLYRHCSNTLEVLNHCLNFYVFCIASSEYTRAFLL 368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,524,153
Number of Sequences: 27780
Number of extensions: 273718
Number of successful extensions: 604
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)