Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0296.Seq
(598 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 26 0.32
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 26 0.32
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 25 0.75
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 1.3
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 23 1.7
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 23 1.7
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 3.0
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 23 3.0
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 23 3.0
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 22 4.0
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 5.3
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 22 5.3
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 22 5.3
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 6.9
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 9.2
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 21 9.2
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 25.8 bits (54), Expect = 0.32
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 476 RPKWAWNFT 450
RP WAWNFT
Sbjct: 656 RPMWAWNFT 664
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 25.8 bits (54), Expect = 0.32
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -3
Query: 476 RPKWAWNFT 450
RP WAWNFT
Sbjct: 656 RPMWAWNFT 664
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 123 KFYKIIIVISRVYLLSNVIFA*MYCNVYR 37
K +KII +S Y +N + +YCN YR
Sbjct: 77 KEHKIISSLSNNYNYNNNNYKKLYCNNYR 105
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 241 YIYQPD*VLYNNA 203
+I++PD VLYNNA
Sbjct: 109 HIWRPDIVLYNNA 121
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 241 YIYQPD*VLYNNA 203
+I++PD VLYNNA
Sbjct: 109 HIWRPDIVLYNNA 121
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 1.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 241 YIYQPD*VLYNNA 203
+I++PD VLYNNA
Sbjct: 105 HIWRPDIVLYNNA 117
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 123 KFYKIIIVISRVYLLSNVIFA*MYCNVYR 37
K +KII +S Y +N + +YCN Y+
Sbjct: 77 KEHKIISSLSNNYNYNNNNYKKLYCNNYK 105
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 1.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 123 KFYKIIIVISRVYLLSNVIFA*MYCNVYR 37
K +KII +S Y +N + +YCN Y+
Sbjct: 77 KEHKIISSLSNNYNYNNNNYKKLYCNNYK 105
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 22.6 bits (46), Expect = 3.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 177 YSNFNKTNKALLYK 218
Y+N+N NK L YK
Sbjct: 94 YNNYNNYNKKLYYK 107
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 241 YIYQPD*VLYNNA 203
+I+ PD VLYNNA
Sbjct: 101 HIWLPDIVLYNNA 113
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.6 bits (46), Expect = 3.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1
Query: 241 YIYQPD*VLYNNA 203
+I+ PD VLYNNA
Sbjct: 101 HIWLPDIVLYNNA 113
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 22.2 bits (45), Expect = 4.0
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 238 IYQPD*VLYNNA 203
+++PD +LYNNA
Sbjct: 87 VWRPDTILYNNA 98
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 203 SIVI*NSIWLIYVCTRLILYFYENINMSQESQNNNTRQ 316
S ++ IW+ +V LI+Y Y I + + N R+
Sbjct: 215 SYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMRE 252
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -1
Query: 238 IYQPD*VLYNNA 203
I+ PD VLYNNA
Sbjct: 115 IWLPDIVLYNNA 126
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.8 bits (44), Expect = 5.3
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 203 SIVI*NSIWLIYVCTRLILYFYENINMSQESQNNNTRQ 316
S ++ IW+ +V LI+Y Y I + + N R+
Sbjct: 91 SYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMRE 128
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 6.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +3
Query: 141 LSHKVHYRIRACYSNFNKTNKALLYK 218
LS+ +Y N+N NK L YK
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLYYK 343
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 345 YYLFSIVVTICLVLL 301
YYLFS+ V+ L+L+
Sbjct: 90 YYLFSLAVSDLLLLI 104
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1
Query: 238 IYQPD*VLYNNA 203
+++PD VL+NNA
Sbjct: 108 VWKPDIVLFNNA 119
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,423
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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