Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0295.Seq
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    29   0.70 
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    28   0.92 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   2.1  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    25   6.5  

>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
 Frame = +1

Query: 16  SLDYGI--NFKFASIFSTRYQNDI*FELRSVYRNVD-----*SERASIAPVSIAIQPTDP 174
           S  YG+  + K+ SIF   Y N +   LRSV  N        +  A+I PV  A+     
Sbjct: 287 SFSYGMGNSVKWGSIFGGAYANSLANSLRSVENNTQQVFFAFTHDANIIPVETALGFFTD 346

Query: 175 SCSERPRPT 201
           +  E P PT
Sbjct: 347 NTPENPLPT 355


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 386 RRGRSLSPLAPTLQINYVSLNTPVLAXSL 472
           R GR  +PL+ T++IN+ +  TP LA  L
Sbjct: 30  RSGRLFAPLSHTMRINHAATFTPDLAKRL 58


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 309 AGRCDATRSDTVRLIPATMSRGKGLSDNASRRVAGSRRT 193
           A    AT  D V L P+T+  G  +SD  +  ++ +R+T
Sbjct: 776 AATTTATNLDAVSLSPSTVRTGSQISDIGNDAISTTRKT 814


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 130 ASIAPVSIAIQPTDPSCSERPRPTRTSDATRRVIAQTFPARHRSRNQAHSIASCRIASPG 309
           A+    ++A QPT      RP+P RT+ +  ++          S N    +   R A+P 
Sbjct: 610 ANANSTTVAKQPTSNVALTRPKPVRTATSQSKIPKPVKHIPSDSNNLDPQLGPWRFANPK 669

Query: 310 QD 315
            D
Sbjct: 670 VD 671


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 230 ITRRVASLVRVGRGLSLQLGSVGWIAILTGAIL 132
           IT  +AS    G  L+ +   + WI++LT  +L
Sbjct: 88  ITIGIASFFIYGSSLTQKFSIIDWISVLTSVLL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,465
Number of Sequences: 5004
Number of extensions: 37578
Number of successful extensions: 100
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)