Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0295.Seq
(605 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 32 0.41
12_01_0880 - 8447941-8447981,8448928-8449261 31 0.54
05_01_0474 - 3797926-3798609 29 2.2
04_03_0899 + 20662671-20662818,20663655-20663959,20664080-206642... 29 2.2
09_04_0136 + 14972687-14973901 29 2.9
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 2.9
07_03_0981 + 23112253-23112538,23112842-23112885 29 3.8
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699 28 6.6
02_04_0594 - 24182946-24183641,24184122-24184476,24184553-241847... 28 6.6
02_01_0144 - 1038547-1039650 28 6.6
10_02_0023 + 4306350-4306908,4308429-4308814,4308917-4308991,430... 27 8.7
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 31.9 bits (69), Expect = 0.41
Identities = 23/71 (32%), Positives = 33/71 (46%)
Frame = +1
Query: 121 SERASIAPVSIAIQPTDPSCSERPRPTRTSDATRRVIAQTFPARHRSRNQAHSIASCRIA 300
++ A+ S + P S P PTR S +R P R RSR+++ S + R A
Sbjct: 34 TDPAAAGSPSPPLPPRKRRLSPTPSPTRRSSRSR----SRSPRRGRSRSRSRSRSRGRSA 89
Query: 301 SPGQDDG*AKR 333
SP DG +R
Sbjct: 90 SPRYPDGKRRR 100
>12_01_0880 - 8447941-8447981,8448928-8449261
Length = 124
Score = 31.5 bits (68), Expect = 0.54
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 142 PVSIAIQPTDPSCSERPRPTRTSDATRRV--IAQTFPARHRSRNQAHSIASCRIASPGQD 315
P + A++PTDP + PR + A RV +A + PAR R + + G D
Sbjct: 11 PAAAALRPTDPETASAPRADPAAAAAPRVYPVAASTPARIRRCDDGGGRPTHGSGGGGHD 70
Query: 316 DG 321
+G
Sbjct: 71 NG 72
>05_01_0474 - 3797926-3798609
Length = 227
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 252 SRGKGLSDNASRRVAGSRRTRPLAAARVCGLDRNTDWSYTS 130
SR G S +R V G+ RP C ++ WSY+S
Sbjct: 97 SRRSGWSAGGARGVLGAMFRRPWRRTSPCSTSSSSSWSYSS 137
>04_03_0899 +
20662671-20662818,20663655-20663959,20664080-20664265,
20665200-20665274,20665596-20665652
Length = 256
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -3
Query: 312 LAGRCDATRSDTVRLIPATMSRGKGLSDNASRRVAGSRRTRPLAAARVCGLDRNTDWSYT 133
L C A R +R+ PA +S L+ +SR A + RP+AAA V G + W+
Sbjct: 5 LRSSCAAARR-LLRISPAALST---LTAASSRPAAVAPLARPIAAAAVSGGNNAFSWNLR 60
Query: 132 SAFRS 118
F S
Sbjct: 61 RLFSS 65
>09_04_0136 + 14972687-14973901
Length = 404
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 113 WIDRNALV*LQSVLRSNPQTRAAARGLVLREPATRRDALSLKPFPRDIVA 262
W+ +A ++S+L NP TR GL L P R+ A P PR I+A
Sbjct: 234 WVTTDARKLIKSLLDPNPGTRITVAGL-LETPWFRKTA----PVPRPIIA 278
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 121 SERASIAPVSIAIQPTDPSCSERPRP---TRTSDATRRVIAQTFPARHRSRNQAHSIASC 291
S+ +S+ + +QP+ S + RPRP T T+ A +A + P HR R A + +
Sbjct: 440 SDPSSVLSRTGQMQPSATSSASRPRPPPTTTTAAAANGHLAASQPQPHRRRPAATATVAT 499
Query: 292 RIAS 303
AS
Sbjct: 500 SSAS 503
>07_03_0981 + 23112253-23112538,23112842-23112885
Length = 109
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -3
Query: 267 IPATMSRGKGLSDNASRRVAGSRRTRPLAAARVCGLDRNTDWSY 136
+PA + +G+G + RR+ R L A V L+R DW +
Sbjct: 14 VPAELCQGQGGARGRRRRLRADEVLRALLVAPVRELERLADWLF 57
>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
Length = 240
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 210 RRDATRYRSNLSRATS*QESGAQYRFVSHRIARPGRRVSEKRTNKTK 350
R+ + YR+ L R + +G +YRF R RR +K+ NK+K
Sbjct: 38 RKLSAAYRAELRRQNALINNGPRYRF--RRPGEKRRRKKKKKHNKSK 82
>02_04_0594 -
24182946-24183641,24184122-24184476,24184553-24184743,
24184840-24185046
Length = 482
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 223 RVIAQTFPARHRSRNQAHSIASCRIASP 306
RV+A+ +P +RSR H I SC +P
Sbjct: 226 RVVAERYPYWNRSRGADHVIVSCHDWAP 253
>02_01_0144 - 1038547-1039650
Length = 367
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 127 RASIAPVSIAIQPTDPSCSERPRPTRTSDATRR 225
RA+ P+++ +PT S S+ P P R S+ R
Sbjct: 9 RAAKLPLAVLAKPTHASASQPPAPPRPSNPRHR 41
>10_02_0023 +
4306350-4306908,4308429-4308814,4308917-4308991,
4309330-4309539,4309649-4309961,4310035-4310130,
4310220-4310357,4310436-4310536,4310645-4310712,
4310800-4310849,4311790-4311848,4312399-4312530
Length = 728
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 385 PPRPLALAARTHTTNKLCLTQHPGAGXFIKHRYF 486
PP P + H ++ HPG+G +I RY+
Sbjct: 695 PPPPPPPSISYHPPPPASISYHPGSGPYIIRRYY 728
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,236,194
Number of Sequences: 37544
Number of extensions: 272241
Number of successful extensions: 731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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