Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0295.Seq
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  28   6.7  
SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)                  27   8.9  

>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 162 THRPELQREASSYANQRRDATRYRSNLSRATS 257
           TH+P L+R       QR    R + N +RATS
Sbjct: 82  THKPRLERHHGKKEKQRHSEKRPKGNNNRATS 113


>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +1

Query: 289 CRIASPGQDDG--*AKRERTKQKQT*SLGSDGSRPPRPLALA-ARTHT 423
           C    PG D G   +KRER+    + S GSDG  PP  LA A  + HT
Sbjct: 657 CSTGEPGHDQGNKLSKRERSSDSCS-SDGSDG--PPNKLAAAEPKPHT 701


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 22/80 (27%), Positives = 33/80 (41%)
 Frame = +1

Query: 193  RPTRTSDATRRVIAQTFPARHRSRNQAHSIASCRIASPGQDDG*AKRERTKQKQT*SLGS 372
            R T+TS  ++    Q    + +   Q    ASC+ + P   D  A R   K KQ      
Sbjct: 1133 RKTKTSKTSKTSKPQDQDKQEKRDKQDKQGASCKTSKPEDQDKTAARPSCKTKQQ-DQDK 1191

Query: 373  DGSRPPRPLALAARTHTTNK 432
              +R PR  +   +T  T+K
Sbjct: 1192 QAAR-PRQASSKTKTSKTSK 1210


>SB_14084| Best HMM Match : DUF1531 (HMM E-Value=0.11)
          Length = 413

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 380 HDRRGRSLSPLAPTLQINYVSLNTPVLAXSLN 475
           H R GR   PL  T  +   +LN P+L    N
Sbjct: 72  HTRHGRDYRPLTYTFPVTRAALNAPLLLLMSN 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,482,308
Number of Sequences: 59808
Number of extensions: 316846
Number of successful extensions: 944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)