Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0295.Seq
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical p... 29 2.6
Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical p... 29 2.6
AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical ... 29 2.6
AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical ... 29 2.6
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z93385-9|CAB07642.1| 843|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi doma... 27 7.9
AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi doma... 27 7.9
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 130 ASIAPVSIAIQPTDPSCSERPRPTRTSDATRRVIA 234
AS+APV + IQ + + P PT + DA+ + +A
Sbjct: 161 ASLAPVPMEIQSQEQPIKKSPAPTPSLDASNKPVA 195
>Z80216-11|CAN99667.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 163 PTDPSCSERPRPTRTSDATRRVIAQTFPAR 252
P PSC E P PT T+++ T P +
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQ 279
>Z80216-10|CAB02286.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 163 PTDPSCSERPRPTRTSDATRRVIAQTFPAR 252
P PSC E P PT T+++ T P +
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQ 279
>AL023823-2|CAN99714.1| 984|Caenorhabditis elegans Hypothetical
protein F10G8.8b protein.
Length = 984
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 163 PTDPSCSERPRPTRTSDATRRVIAQTFPAR 252
P PSC E P PT T+++ T P +
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQ 279
>AL023823-1|CAA19441.4| 949|Caenorhabditis elegans Hypothetical
protein F10G8.8a protein.
Length = 949
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 163 PTDPSCSERPRPTRTSDATRRVIAQTFPAR 252
P PSC E P PT T+++ T P +
Sbjct: 250 PVSPSCQEEPTPTSTTNSATTPTISTTPTQ 279
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 135 YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS*QESGAQYRFVSH 296
+S+S DP HR EL RE AN ++ RY S + QYR ++H
Sbjct: 668 FSASLASDPIHRTELSREVQP-ANIQQYTRRYHHGDSIH---KPDTPQYRLITH 717
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical
protein ZK270.2d protein.
Length = 4648
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 135 YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS*QESGAQYRFVSH 296
+S+S DP HR EL RE AN ++ RY S + QYR ++H
Sbjct: 657 FSASLASDPIHRTELSREVQP-ANIQQYTRRYHHGDSIH---KPDTPQYRLITH 706
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical
protein ZK270.2a protein.
Length = 4530
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 135 YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS*QESGAQYRFVSH 296
+S+S DP HR EL RE AN ++ RY S + QYR ++H
Sbjct: 657 FSASLASDPIHRTELSREVQP-ANIQQYTRRYHHGDSIH---KPDTPQYRLITH 706
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical
protein ZK270.2e protein.
Length = 4541
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 135 YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS*QESGAQYRFVSH 296
+S+S DP HR EL RE AN ++ RY S + QYR ++H
Sbjct: 668 FSASLASDPIHRTELSREVQP-ANIQQYTRRYHHGDSIH---KPDTPQYRLITH 717
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical
protein ZK270.2d protein.
Length = 4648
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 135 YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS*QESGAQYRFVSH 296
+S+S DP HR EL RE AN ++ RY S + QYR ++H
Sbjct: 657 FSASLASDPIHRTELSREVQP-ANIQQYTRRYHHGDSIH---KPDTPQYRLITH 706
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical
protein ZK270.2a protein.
Length = 4530
Score = 28.3 bits (60), Expect = 4.5
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +3
Query: 135 YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS*QESGAQYRFVSH 296
+S+S DP HR EL RE AN ++ RY S + QYR ++H
Sbjct: 657 FSASLASDPIHRTELSREVQP-ANIQQYTRRYHHGDSIH---KPDTPQYRLITH 706
>Z93385-9|CAB07642.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 121 SERASIAPVSIAIQPTDPSCSERPRPTRTSDATRRVIAQTFPARHRSRNQAHSIASCRIA 300
+E + IAP SI+ DP+ P T+TS T ++ F + NQ + +
Sbjct: 326 TEASQIAPESISTSNVDPATQLDPETTQTSPLTSAPVS-WFNSESSDINQDITSYPDLVH 384
Query: 301 SPGQD 315
PG D
Sbjct: 385 HPGVD 389
>Z81083-7|CAB03105.1| 843|Caenorhabditis elegans Hypothetical
protein F44F1.7 protein.
Length = 843
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 121 SERASIAPVSIAIQPTDPSCSERPRPTRTSDATRRVIAQTFPARHRSRNQAHSIASCRIA 300
+E + IAP SI+ DP+ P T+TS T ++ F + NQ + +
Sbjct: 326 TEASQIAPESISTSNVDPATQLDPETTQTSPLTSAPVS-WFNSESSDINQDITSYPDLVH 384
Query: 301 SPGQD 315
PG D
Sbjct: 385 HPGVD 389
>AF000265-2|AAO38667.1| 887|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform c protein.
Length = 887
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 237 LSDNASRRVAGSRRTRPLAAARVCGLDRNTDWSYTSAFRSIHISINRP*FK 85
+SD + A T PLAA + ++R T + + R + I N+P +K
Sbjct: 10 VSDRPAAPAAQKLGTAPLAAKKTRNVERGTKVNIDTNIRKLTIKPNQPIYK 60
>AF000265-1|AAB52946.2| 913|Caenorhabditis elegans Paz/piwi
domain-containing protein1, isoform a protein.
Length = 913
Score = 27.5 bits (58), Expect = 7.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 237 LSDNASRRVAGSRRTRPLAAARVCGLDRNTDWSYTSAFRSIHISINRP*FK 85
+SD + A T PLAA + ++R T + + R + I N+P +K
Sbjct: 36 VSDRPAAPAAQKLGTAPLAAKKTRNVERGTKVNIDTNIRKLTIKPNQPIYK 86
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,300
Number of Sequences: 27780
Number of extensions: 221000
Number of successful extensions: 609
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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