Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0295.Seq
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.1  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.4  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 251 DIVAGIRRTVSLRVASHRPA 310
           +++A +  T+ + V SHRPA
Sbjct: 9   EVIAAVLLTILIFVTSHRPA 28


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 107 EMWIDRNALV*LQSVLRSNPQTR 175
           EM +DR  L  L+S++  NP+ R
Sbjct: 325 EMKMDRTELGCLRSIILFNPEVR 347


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 107 EMWIDRNALV*LQSVLRSNPQTR 175
           EM +DR  L  L+S++  NP+ R
Sbjct: 325 EMKMDRTELGCLRSIILFNPEVR 347


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 160 QPTDPSCSERPRPTRTSDATR 222
           QPT   CS+R RP   + + +
Sbjct: 875 QPTMNKCSDRKRPASQATSVK 895


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/36 (22%), Positives = 16/36 (44%)
 Frame = +3

Query: 135  YSSSQYCDPTHRPELQREASSYANQRRDATRYRSNL 242
            Y + ++   TH     ++  +Y    RD  RY  ++
Sbjct: 1082 YQTLKHIIQTHGEMTDKQVEAYMLSLRDENRYHEDI 1117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,209
Number of Sequences: 438
Number of extensions: 2928
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)