Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0295.Seq
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49890.1 68414.m05593 expressed protein contains Pfam domain,...    30   1.4  
At5g42780.1 68418.m05210 zinc finger homeobox family protein / Z...    29   2.4  
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea...    28   5.5  
At5g20680.1 68418.m02456 expressed protein predicted proteins, A...    28   5.5  
At5g64750.1 68418.m08142 AP2 domain-containing transcription fac...    27   9.6  
At5g08630.1 68418.m01026 DDT domain-containing protein low simil...    27   9.6  

>At1g49890.1 68414.m05593 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 659

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 145 VSIAIQPTDPSCSERPRPTRTSD--ATRRVIAQTFPARHRSRNQAHSIAS 288
           V+ AI  TDP    R RP   ++    RR   +  P+R+ S + +HS++S
Sbjct: 2   VAAAISTTDPRNPPRDRPQSLTNNGGQRRPRGKQVPSRYLSPSPSHSVSS 51


>At5g42780.1 68418.m05210 zinc finger homeobox family protein /
           ZF-HD homeobox family protein similar to unknown protein
           (pir||T05568)
          Length = 242

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 172 PSCSERPRPTRTSDATRRVIAQTFPARHR 258
           P+C  +P+PTRT  A   ++   F   H+
Sbjct: 33  PTCKTKPKPTRTHHAPPPILDSIFKVTHK 61


>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
           family protein similar to TBP-associated factor
           (GI:1732075) [Homo sapiens] and to 100 kDa subunit of
           Pol II transcription factor (GI:1491718) {Homo sapiens];
           contains Pfam PF00400: WD domain, G-beta repeat (6
           copies)|8689032|gb|AV528749.1|AV528749
          Length = 666

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 138 SSSQYCDPTHRPELQREASSYANQRRDATRYRSNLSRATS 257
           SS    D  + PEL +   S++ Q  D TRYR   S+  S
Sbjct: 37  SSFTSVDYHNDPELTKLIRSFSQQEDDPTRYREGYSKLRS 76


>At5g20680.1 68418.m02456 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 551

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -3

Query: 303 RCDATRSDTVRLIPATMSRGKGLSDNASRRVAGSRRTRPLAAARVCGLDRNTDWSYTS 130
           R D T +  +       ++GK + DN     +GS+  + LA+   C L + TD+++ S
Sbjct: 198 RTDGTSTARITNQACNYAKGKWVVDNHRPLYSGSQCKQWLASMWACRLMQRTDFAFES 255


>At5g64750.1 68418.m08142 AP2 domain-containing transcription
           factor, putative contains similarity to transcription
           factor
          Length = 391

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 136 IAPVSIAIQPTDPSCSERPRPTRTSDATRRVIAQTFPARHRSRNQAHS 279
           + P S   QP   + ++RP  +R S +T  ++    P R  S    HS
Sbjct: 247 VRPASTEAQPVHQTAAQRPTQSRNSGSTTTLL----PIRPASNQSVHS 290


>At5g08630.1 68418.m01026 DDT domain-containing protein low
           similarity to SP|Q9NRL2 Bromodomain adjacent to zinc
           finger domain protein 1A (ATP-utilizing chromatin
           assembly and remodeling factor 1) (ATP-dependent
           chromatin remodelling protein) (Williams syndrome
           transcription factor-related chromatin remodeling factor
           180) {Homo sapiens}; contains Pfam profile PF02791: DDT
           domain
          Length = 723

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 106 RNVD*SERASIA-PVSIAIQPTDPSCSERPRPTR 204
           R V+ SE  +I  P+   + P DP  ++RP P+R
Sbjct: 258 REVNGSEEEAINYPIEDLLLPPDPDVTQRPSPSR 291


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,221,489
Number of Sequences: 28952
Number of extensions: 201858
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)