Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0294.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    73   5e-12
UniRef50_A7CH65 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
           Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 72.5 bits (170), Expect = 5e-12
 Identities = 36/67 (53%), Positives = 36/67 (53%)
 Frame = +3

Query: 3   GASSSTQATTVSGADDSADSYTWWWNPRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 182
           GASSSTQATTVSGADDSADSYTWWWNPRR                               
Sbjct: 524 GASSSTQATTVSGADDSADSYTWWWNPRRSSSSSSSASSSSSGSNVGGSSQSSGSSTSGS 583

Query: 183 NARGHLG 203
           NARGHLG
Sbjct: 584 NARGHLG 590



 Score = 34.7 bits (76), Expect = 1.2
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 3    GASSSTQATTVSGADDSADSYTWWWNPRR 89
            GASSS+ +T  S A  S D + WWWN R+
Sbjct: 1058 GASSSSASTAKSDAASSEDGF-WWWNRRK 1085


>UniRef50_A7CH65 Cluster: Putative uncharacterized protein; n=1;
           Ralstonia pickettii 12D|Rep: Putative uncharacterized
           protein - Ralstonia pickettii 12D
          Length = 350

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +1

Query: 16  PLKLLQSVAQTTVLILTPGGGILD 87
           P KLLQS++Q T L+L PG G LD
Sbjct: 175 PRKLLQSMSQQTNLVLDPGYGTLD 198


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,227,693
Number of Sequences: 1657284
Number of extensions: 6812315
Number of successful extensions: 13978
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13964
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)