Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0294.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.50 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   2.7  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.1  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 0.50
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 264 RDPDFLSLNR-CYWYCQWTKRFLDD 193
           + P  L  N  C +Y  WT+ +LDD
Sbjct: 277 QSPGVLGFNEICSFYSDWTRVWLDD 301


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 207 RFLDDRGHYFQKCCYRWIERNHQ 139
           R + DRG      CYR + RN Q
Sbjct: 302 RQMYDRGESKGSSCYRLLSRNGQ 324


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
          beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 75 TTRCKNQHCRLRH 37
          T +C NQ C  RH
Sbjct: 57 TWQCINQRCERRH 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,295
Number of Sequences: 336
Number of extensions: 1956
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)