Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0294.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    27   2.1  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    23   3.7  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   8.4  

>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 19  LKLLQSVAQTTVLILTPGGGILD 87
           L++L+  AQT  + LT GGGI D
Sbjct: 305 LQVLEKAAQTVFVPLTVGGGIRD 327


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect(2) = 3.7
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 174 KCCYRWIERNHQHW 133
           +C Y+W + N Q W
Sbjct: 507 ECIYKWAQTNLQRW 520



 Score = 20.6 bits (41), Expect(2) = 3.7
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -2

Query: 228 WYCQWTKRFLDDRGHYFQKC 169
           W CQ    F+D    ++++C
Sbjct: 474 WDCQKIDEFMDAELKFYKEC 493


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 255 DFLSLNRCYWYCQWTKRFLDDRGHYFQKCCYRWIERNHQH 136
           D++S    +W+ Q   RF + R  ++       +E  H+H
Sbjct: 383 DYMSGGELFWHLQHEGRFPEQRAKFYIAELVLALEHLHKH 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,191
Number of Sequences: 5004
Number of extensions: 27328
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)