Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0294.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619           29   2.7  
11_06_0198 - 21158350-21159528                                         28   4.8  
01_05_0379 + 21630223-21631188                                         28   4.8  

>07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619
          Length = 314

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 3   GASSSTQATTVSGADDSADSYTWWW 77
           G S   QA +  GA + A S+ WWW
Sbjct: 265 GRSGVRQARSGGGAAEFAGSWRWWW 289


>11_06_0198 - 21158350-21159528
          Length = 392

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -2

Query: 255 DFLSLNRCYWYCQWTKRFLD--DRGHYFQKCCYRWIERNHQHW-SQSC 121
           D+    RC   C+  ++ +D  D  H+ +  CY+    +H  W  Q C
Sbjct: 138 DWWEKQRCLMDCRHRRQEVDADDDNHHGRDPCYKQCRHHHDQWKKQQC 185


>01_05_0379 + 21630223-21631188
          Length = 321

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 21 QATTVSGADDSADSYTWWWNPRR 89
          + T + G DDS D   W+++PRR
Sbjct: 6  EVTFLDGDDDSDDDDRWYYSPRR 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,540,169
Number of Sequences: 37544
Number of extensions: 205847
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)