Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0294.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical...    28   4.3  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical p...    27   7.6  

>AF003151-14|AAT68900.1|  399|Caenorhabditis elegans Hypothetical
           protein D1007.10b protein.
          Length = 399

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 26  YYSQWRRRQC*FLHLVVES*TIKQLLFISKF*QLWLQCWWFLSIQR 163
           Y +++   Q  FLH++ E+  +K+ +  + F    L   WFL I+R
Sbjct: 84  YLTRFLSEQVPFLHVIDEALLVKRFVMCACFMVFCLTVIWFLVIRR 129


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -3

Query: 389 RQMXWILHSLCLNQCCWNCRW-MIRFHXDGWSYIHKCCYRR 270
           +Q  W  +S  +  CCWN  +  +      W    K C R+
Sbjct: 122 KQWCWQCNSEAIYHCCWNTAYCSVECQQGHWQIHRKFCRRK 162


>Z81553-12|CAB04498.3|  803|Caenorhabditis elegans Hypothetical
           protein F56H6.9 protein.
          Length = 803

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 171 CCYRWIERNHQHW 133
           C Y W+E + QHW
Sbjct: 729 CSYLWVEEDRQHW 741


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,316,289
Number of Sequences: 27780
Number of extensions: 164992
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)