Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0293.Seq
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    29   0.038
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    27   0.12 
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    27   0.12 
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    27   0.12 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   1.9  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    23   2.5  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    23   2.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.3  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 28.7 bits (61), Expect = 0.038
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 144 NLKHYKEYSKSCLVVLNTDILTEMVRNI--EYVFEAKAYFP 260
           N+K  K   + C + +N   L E  RN+  + +F  +AYFP
Sbjct: 718 NMKLEKVPGECCAICVNATSLVESNRNVPQKCIFNGQAYFP 758


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 280 LLHKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
           LL K G   YA    TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 280 LLHKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
           LL K G   YA    TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 280 LLHKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
           LL K G   YA    TYS+F+  ++ ++V+  T   +++ +
Sbjct: 237 LLQKMGNA-YARTYSTYSLFMMANITVAVYGFTSEIVDHGI 276


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 9   VYYLGNTITFFFFPV 53
           V++LG+ + FF FP+
Sbjct: 236 VFFLGSILIFFIFPL 250


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 253 YAFASKTYSIFLT-ISVRISVFNTTKHDLEY 164
           Y + +KTYS+F+  ++V +  F     +L+Y
Sbjct: 168 YQYGTKTYSLFIVFMTVILPYFINLLMELQY 198


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 253 YAFASKTYSIFLT-ISVRISVFNTTKHDLEY 164
           Y + +KTYS+F+  ++V +  F     +L+Y
Sbjct: 168 YQYGTKTYSLFIVFMTVILPYFINLLMELQY 198


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 267 LVKENMPLLRKHIR 226
           L+KE MPL RK +R
Sbjct: 449 LIKETMPLPRKLVR 462


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,104
Number of Sequences: 336
Number of extensions: 2638
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)