Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0293.Seq
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.86 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.1  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   2.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   3.5  
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    26   3.5  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   3.5  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   4.6  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    25   6.1  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   6.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    25   8.0  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   8.0  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = -3

Query: 495  KSGSGHKSATDSHPQPIRRAPTVPA-APIPPQARPGQAQPL--QAVLLPRAVQVHRTLPP 325
            KS SG  SA    P P    P++PA +  PP   P    P+   +V  P   +    +PP
Sbjct: 1054 KSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113

Query: 324  L 322
            +
Sbjct: 1114 V 1114


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 301
           AP  PAAP+ P+A P   Q     ++P A+ V +  PP+  V P V
Sbjct: 544 APQRPAAPVVPEA-PSVPQRPAVPVVPEALSVPQ--PPVAPVAPEV 586


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -3

Query: 510 GWNRRKSG-SGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 334
           G N+  SG S  K ATD+     +  P     P  P A+PG          P +   H+T
Sbjct: 364 GANQTSSGFSFGKPATDTTTSTSKTGPLFGNKPADPSAKPGATASTTPSEPPPSSIKHKT 423

Query: 333 L 331
           L
Sbjct: 424 L 424


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
           +T   P P+  +  V   P PP A PG++ P
Sbjct: 371 STGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401



 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -3

Query: 489 GSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
           G+G  +++   P P  R+    + P+PPQ R     P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQA 385
           H     S+P  ++R P +PA P+ P  RP  A
Sbjct: 215 HDEYAFSYPYELQRKPLIPAHPV-PSFRPTSA 245


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 201 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 100
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 434 RQCQQHRFHLKHVRGKHNHFRQFFYLGRFKYI 339
           ++ Q   FH+ + +GKH   R ++  GR K I
Sbjct: 53  KESQDVEFHVTNRQGKHPLIRAYYNTGREKVI 84


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 276 YTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV*DFKSY 133
           Y+S+   ++P +  ++ Y+   P  Y C I  N+   +P S  DF ++
Sbjct: 441 YSSIYSNDVPAIPPNVPYTFVDPYTYACYINNNS--YLPPSYMDFYTW 486


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 453 QPIRRAPTVPAAPIPPQARPGQ 388
           +P+ R P +P  P+P +  PG+
Sbjct: 101 EPLPREPPLPNEPVPEEPLPGE 122


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
 Frame = -3

Query: 495 KSGSGHKSATDSHP---QPIRRAPTVPAA------PIPPQARPGQAQP---LQAVLLPRA 352
           ++G+ +     +HP   QPI  AP VPA       PIPPQA P    P      V LP A
Sbjct: 219 QNGTYYSIPAVNHPMAGQPIAIAP-VPAPNQAALPPIPPQALPANGTPNTLASPVTLPAA 277

Query: 351 VQVHRTLPPL 322
               +   P+
Sbjct: 278 NSAVQNAQPV 287


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 313 VSRSHHSGVNRLLHKPGQGKYAFASKTYSIFL 218
           V + H  G+N L   PG    A ASK   I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 486 SGHK-SATDSHPQPIRRAPTVPAAPIPP 406
           +GH  + T   P+   R P++P+A +PP
Sbjct: 225 AGHAPNVTSESPKFPNRGPSIPSASVPP 252



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -3

Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLL-PRAVQVHRTLPPL 322
           P P    P    AP  P + P  AQP   V   P A  +   +PP+
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPM 197


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 450 PIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
           P RR   V PAAP+P  A P +  P  A   P+  +     P L L
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLML 361


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 306 GVIIQA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCS 154
           G+  Q  ++FY +   +N+ ++    +  LP+    R LIQ+  T+ IP S
Sbjct: 160 GIQAQTLSNFYMAF-SQNLVIIPVLNKVDLPTADVDRTLIQVQQTFDIPMS 209


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -3

Query: 507 WNRRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
           WNR        S+  S PQ  ++ P   A P  P  +P + QP
Sbjct: 188 WNRSSFSEALSSSRFSRPQVGQQQPLSSAFPFQPVKQPTE-QP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,495
Number of Sequences: 5004
Number of extensions: 44039
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)