Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0293.Seq
(578 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0176 - 23329589-23331043 34 0.071
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 33 0.16
02_03_0367 + 18220099-18220905 32 0.29
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 32 0.38
03_05_0576 + 25765137-25766420 32 0.38
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 31 0.66
03_01_0019 + 167900-168343,168567-168751,169076-169430 31 0.66
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 31 0.88
07_03_1090 + 23891294-23892222,23892317-23892516,23895241-238954... 30 1.2
07_01_0313 + 2216498-2216953 30 1.2
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293... 30 1.2
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 30 1.2
06_01_0099 + 824557-825532,826090-826245,826422-828064 30 1.5
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 29 2.7
08_02_1615 + 28257275-28258428,28258523-28259144 29 2.7
06_01_0512 - 3695109-3695523,3696318-3696868 29 2.7
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 29 2.7
01_01_0070 - 542603-542686,542803-543441 29 2.7
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 29 3.5
08_01_0059 - 394001-394708 29 3.5
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 3.5
04_04_0758 - 27826787-27828178 29 3.5
04_04_0757 - 27822139-27823530 29 3.5
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 29 3.5
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854... 29 3.5
08_02_1012 + 23550314-23551504 28 4.7
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 4.7
01_01_0715 - 5542648-5543219,5543352-5543544 28 4.7
12_02_0058 + 13015401-13016654 28 6.2
10_01_0112 - 1386762-1386953,1387228-1387309,1387399-1387509,138... 28 6.2
09_01_0016 - 376742-376883,377973-378964 28 6.2
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 6.2
07_01_0312 + 2214050-2214556 28 6.2
05_07_0220 + 28482589-28483752 28 6.2
02_01_0302 - 2021221-2023305 28 6.2
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 28 6.2
01_07_0346 + 42889121-42890406,42896115-42896118 28 6.2
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 27 8.2
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 27 8.2
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 27 8.2
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 27 8.2
06_01_1113 - 9164953-9165044,9166453-9166586,9166624-9166734,916... 27 8.2
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 27 8.2
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 27 8.2
03_01_0515 - 3864796-3865425 27 8.2
>04_04_0176 - 23329589-23331043
Length = 484
Score = 34.3 bits (75), Expect = 0.071
Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -3
Query: 483 GHKSATDSHPQPIRRA----PTVPAAPIPPQARPGQAQPLQAVLLPRAVQV-HRTLPPLR 319
GH + + S P P RR PT A P PP+ P Q QP LLP A R PP
Sbjct: 68 GHSALSPSPPPPPRRGPLPDPTAKAEPEPPKPTP-QQQP--QPLLPAAKPAPPRASPPTT 124
Query: 318 LVFPG 304
VF G
Sbjct: 125 AVFIG 129
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 507 WNRRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLL 361
W R G G + +D H PI R P +PA +P +PL+ LL
Sbjct: 123 WGERMGGDGRNAGSDLHAPPI-RTPVLPAHALPSSC---PLEPLEFALL 167
>02_03_0367 + 18220099-18220905
Length = 268
Score = 32.3 bits (70), Expect = 0.29
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -3
Query: 495 KSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
+S + S++ +R P P +P+ P+ P Q QP Q A +VH PP
Sbjct: 133 ESSAPPSSSSSKRRDKGKRRPPPPPSPMSPKVTPAQQQPPQP-----AEKVHDASPPPSS 187
Query: 315 VFP 307
+FP
Sbjct: 188 LFP 190
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 507 WNRRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPG 391
W+ + H++ + P P PT PA P PP AR G
Sbjct: 35 WSAPPPPARHRAPSPPRPPPPPPPPTQPAPPPPPPARSG 73
>03_05_0576 + 25765137-25766420
Length = 427
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -3
Query: 504 NRRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
+RRK G ++ P P P P++P PP P A + +V P + LPP
Sbjct: 57 SRRKKRGGPEAPPSPSPSPSPSPPPQPSSPPPPPPSPPPAAAV-SVSPPTQPRPRPELPP 115
Query: 324 LRLV 313
+ V
Sbjct: 116 VEAV 119
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 462 SHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
+H QP ++ P P P+P A+P Q A P A LPP
Sbjct: 33 NHHQP-QQPPMTPTTPLPEAAKPPQNPEKTAASSPHAPSSRPPLPP 77
>03_01_0019 + 167900-168343,168567-168751,169076-169430
Length = 327
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -3
Query: 510 GWNRRKSGSGHKSATDSHPQPIRRAPTVPAAPIP 409
G + S S S+T S P P+ PT P PIP
Sbjct: 41 GISGNASSSSSNSSTPSIPPPVAPTPTAPTPPIP 74
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 434 RQCQQHRFHLKHVRGKHNHFRQFFYL 357
RQ QQ + +H+R +H+H R +FYL
Sbjct: 167 RQQQQQQLKGRHLRPRHSHRRGYFYL 192
>07_03_1090 +
23891294-23892222,23892317-23892516,23895241-23895482,
23895771-23896461,23896486-23896562
Length = 712
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
H+ + D P P+ + P+ P+PP RP ++QP
Sbjct: 122 HEKSPDLRPLPLLKQPSPDLRPLPPLKRP-ESQP 154
>07_01_0313 + 2216498-2216953
Length = 151
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = -3
Query: 450 PIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA 289
P+ PTVPA +PP + AV LP V T+PP +V P ++ A
Sbjct: 76 PMPAIPTVPAVTMPPMP---AVPAVPAVTLPPMPAV-PTVPPNTVVVPAAVVPA 125
>04_04_1104 -
30928475-30928501,30929008-30929110,30929287-30929340,
30929803-30929895,30930063-30930140,30930416-30930527,
30930618-30930756,30930823-30930910,30930984-30931079,
30931675-30931781,30931874-30932009,30932089-30932186,
30932954-30933047,30933132-30933301,30933749-30933819,
30936066-30936194,30936552-30936654,30936764-30936907,
30937123-30937245,30937482-30937563,30939044-30939120,
30939261-30939315,30939365-30939443,30939544-30939620,
30939739-30939869,30939947-30940120,30940245-30940310,
30940937-30941572
Length = 1113
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/48 (43%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = -3
Query: 450 PIRRAPTVPA---APIPPQARPGQAQPLQAV---LLPRAVQVHRTLPP 325
P RAP VPA AP PP PG Q Q V L+P + + T PP
Sbjct: 162 PASRAPLVPAPPPAPFPPVPTPGMTQAPQMVPGALIPMVLPI--TDPP 207
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 450 PIRRAP-TVPAAPIPPQARPGQAQPLQAVLLPRAVQVHR 337
PI +A T+P AP PPQ PG+A P A ++P Q+ R
Sbjct: 144 PIDKAKATLPPAPFPPQ-HPGRADP--AEMMPPTKQIVR 179
>06_01_0099 + 824557-825532,826090-826245,826422-828064
Length = 924
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 462 SHPQ---PIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRT 334
+HP P RAP + P+PP + P Q P + PR HR+
Sbjct: 402 THPNSFSPHHRAPAMAPYPLPPPSPPQQQLPPASSSKPRRPPPHRS 447
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/58 (29%), Positives = 22/58 (37%)
Frame = -3
Query: 474 SATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGV 301
S+TD P P P+P A P A PL + LP + L PG+
Sbjct: 209 SSTDEPSTSSALPPPTPPRPLPDMAGPSSATPLLPLQLPGLAGSSSAMSLPALQLPGM 266
>08_02_1615 + 28257275-28258428,28258523-28259144
Length = 591
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
H + SHPQP A P P P P ++ P + + + LPP L
Sbjct: 41 HHHSPQSHPQPDAPAAAAPPPPAPLTPPPPKSPPPPPHIQTTDLPPPKPLPPAPL 95
>06_01_0512 - 3695109-3695523,3696318-3696868
Length = 321
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/52 (30%), Positives = 21/52 (40%)
Frame = -3
Query: 501 RRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQ 346
RR+ ++A H +RR VP P P P P+ LLP Q
Sbjct: 240 RRRITGDQQAAAAEHAAALRRRMPVPPPPFNPFLLPSLVAPVMHRLLPPGSQ 291
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAP-IPPQARPGQAQPLQA 370
H SA+D P P RAP +P+ P +PP P A P ++
Sbjct: 33 HLSASD--PSPTTRAPLLPSPPRLPPLLVPFAAVPARS 68
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
P P+ P P +PP P A P +A P A+ T PP+
Sbjct: 107 PPPVSPPPATPPPALPPSTPPPVAAPAEA---PAALPPATTPPPV 148
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 462 SHPQPIRRAPTVPAAPIPPQARPGQAQ 382
SHP PIR A V P PP P Q
Sbjct: 321 SHPPPIRMASPVRIRPAPPLFTPSAVQ 347
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPP--QARPGQAQPLQ 373
P P RRAP PA P PP +A P + P++
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPPIR 33
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 486 SGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 373
S +A P P + P AP PPQ RP P Q
Sbjct: 50 SAAPTAPPPKPSPTPPPASPPPAPTPPQTRPPSPPPQQ 87
>04_04_0758 - 27826787-27828178
Length = 463
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 429 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>04_04_0757 - 27822139-27823530
Length = 463
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 429 VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
V A P P Q Q L +L R + VH PP L
Sbjct: 11 VVAVPFPAQGHLNQLMHLSLLLASRGLDVHYAAPPAHL 48
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/33 (45%), Positives = 15/33 (45%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P AP PAAP ARP QP AV P
Sbjct: 74 PPSTTTAPPPPAAPAVTPARPPPQQPAVAVAAP 106
>03_02_0444 -
8543426-8543635,8543945-8544151,8544293-8544400,
8544744-8544803,8544914-8544989,8545190-8545347,
8545479-8545541,8545653-8545737,8546423-8547438
Length = 660
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Frame = -3
Query: 516 VSGWNRRKSGSGHKSATDSHPQPIRRAPT--------VPAAPIPPQ-ARPGQAQPLQAVL 364
V+ W K+G S++ S P+P P V A PP P A L A
Sbjct: 104 VADWEAHKAGRSSFSSSASTPKPREEPPARDSPVRREVAAEEEPPSLPAPAAAPVLPAKE 163
Query: 363 LPRAVQVHRTLPPLRL 316
PR+V + P LR+
Sbjct: 164 TPRSVAIEAPAPLLRV 179
>08_02_1012 + 23550314-23551504
Length = 396
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 477 KSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
+S + P P+ AP V +A P ARP + +P +A
Sbjct: 168 RSPRPASPPPVPAAPEVASAVSTPPARPKRGRPPRA 203
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 498 RKSGSGHKSATDSHPQPIR-RAPTVPAAPIPPQARPGQ 388
R S KSAT + + I+ RAP P P PP RP Q
Sbjct: 674 RSQISSSKSATPAQTRSIKTRAPNPPPPP-PPPRRPSQ 710
>01_01_0715 - 5542648-5543219,5543352-5543544
Length = 254
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 483 GHKSATDSHPQPIRRAPTVPAAPIPPQARPGQA 385
G+ +AT + P P PTVPAAP P + P A
Sbjct: 134 GNATATPTTPSP-PPPPTVPAAPTPRPSPPPPA 165
>12_02_0058 + 13015401-13016654
Length = 417
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 453 QPIRRAPT-VPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
QP AP VPAAP PP+ P Q P + + PPL+ P
Sbjct: 171 QPQEPAPLPVPAAPAPPRQVPVVTQQAPPPPPPLVPVITQDAPPLKRPAP 220
>10_01_0112 -
1386762-1386953,1387228-1387309,1387399-1387509,
1387590-1387841,1387927-1388348,1388430-1390160,
1390251-1390448
Length = 995
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -3
Query: 456 PQPIRRAPTVP----AAPIPPQARPGQAQPLQAVLL 361
PQP++ +PT P A P PP + P A+L+
Sbjct: 610 PQPVQASPTSPTKQHAPPAPPSVQTSPPTPQSALLI 645
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 465 DSHPQPIRRAPTVPAAPIPPQARPGQ 388
DSH P ++AP V P PP P Q
Sbjct: 46 DSHGAPTKKAPFVAPPPPPPPPPPPQ 71
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -3
Query: 456 PQPIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
PQP P V P PPQ +P Q Q LQ LP+ +Q LPP
Sbjct: 201 PQP---QPQVHPQPQQPPQLQP-QPQLLQQPQLPQQLQPQSQLPP 241
>07_01_0312 + 2214050-2214556
Length = 168
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = -3
Query: 456 PQP-IRRAPTVPAAPIPPQAR--PGQAQPL--QAVLLPRAVQVHRTLPPL 322
P P + PTVPA P P A P A P AVL P TLPP+
Sbjct: 91 PMPAVPAVPTVPAVPAVPAASLPPMPAVPAVPNAVLPPMPAVPKVTLPPM 140
>05_07_0220 + 28482589-28483752
Length = 387
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = -3
Query: 432 TVPAAPIPPQARPGQ-----AQPLQAVLLPRAVQVHRT 334
TVPA P PPQ+ P A P + +LP+++ + T
Sbjct: 172 TVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRST 209
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -3
Query: 483 GHKSATDSHPQPIRRAPTVPAAPIPP-QARPGQAQPLQAVLLP 358
G S T S+P P P+ P+ P PP P P + P
Sbjct: 462 GSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSYPSPPSSSTTP 504
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 27.9 bits (59), Expect = 6.2
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP-RAVQ-VHRTLPPLRL 316
A D P P AP P +PP A + P A +P RAV+ HR +P + L
Sbjct: 130 AWDPSPPPPPPAPAAPVL-VPPPAPAPRPAPAPAPRVPARAVEHDHRVVPDILL 182
>01_07_0346 + 42889121-42890406,42896115-42896118
Length = 429
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 474 SATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAV 367
S D P P RRA T P PP+ P Q + L+ V
Sbjct: 15 SGDDGEPNPRRRARTPPP---PPRQSPKQGEALERV 47
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRA 352
P P R P PA P+P P P L P A
Sbjct: 354 PAPHPRVPRAPAPPVPAPPAPTPPIPTPPALAPPA 388
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 483 GHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
G S+ P P +P P+AP PP P Q P +A L P
Sbjct: 100 GVNSSQPPPPPPPPPSPP-PSAPPPPPPPPTQPPPREAQLAP 140
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
AP +P++ PP A P + PLQ + + PPL + P
Sbjct: 321 APPIPSSEPPPSALPNNSFPLQPPGGSLSTLSYTGPPPLMNIMP 364
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPP 325
P P APT P AP P R P QA L P + + PP
Sbjct: 174 PPPQAPAPTPPQAPAPTPPRAPTPTPPQAPLPAPSKSRASQAPPP 218
>06_01_1113 -
9164953-9165044,9166453-9166586,9166624-9166734,
9166815-9167066,9167152-9168186,9168313-9169187,
9169476-9169673
Length = 898
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPG-QAQP 379
PQP++ +PT PA P A P QA P
Sbjct: 502 PQPVQASPTSPAKQHAPPAPPSVQASP 528
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +1
Query: 385 CLPRTCLRWNRCCWH-----CRCSSYRLWMTVGSAFVTG 486
CLP TCLR +R CR S RLW GS F+ G
Sbjct: 61 CLP-TCLRRHRRSSRRSHRRCRRRSPRLWRRSGSGFLLG 98
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 578 REELLPAQ-RXPPKATPRHLKRFLGGIEGNQDPVTKALP 465
+ LLP++ R P P H++ G +G +DP+ K++P
Sbjct: 127 QNSLLPSRIREPDLELPPHVEGPSVGRQGGEDPLNKSVP 165
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 468 TDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
T++ P P+ P+V ++P PP A P P
Sbjct: 44 TEASPPPLAPPPSVTSSPPPPAAGPLMPPP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,969,826
Number of Sequences: 37544
Number of extensions: 288244
Number of successful extensions: 1474
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -