Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0293.Seq
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.51
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 30 1.2
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.6
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.6
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11) 28 4.8
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84) 27 8.4
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 27 8.4
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 27 8.4
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 9.1
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 298
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 30.7 bits (66), Expect = 0.90
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Frame = -3
Query: 501 RRKSGSGHKSATDSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA-----VLLPRAVQVH 340
R K + A ++ +P ++ P VP + PQA PG P+ A + P A+
Sbjct: 101 REKKPKEKRKAPENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPMAIPTQ 160
Query: 339 RTLPPLRLVFPGVIIQA*TDFYTSLVKENMP 247
+ P ++F + T+ S++ P
Sbjct: 161 QPDLPNNILFLTNLPMETTELMLSMLFNQFP 191
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -3
Query: 459 HPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
HP P+RR P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 27 HP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -3
Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -3
Query: 432 TVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 325
T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 1007 TLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
AT H Q + P+PP P Q+ P +L+P + LPP
Sbjct: 617 ATPPHLQSTAQPRPTTVPPLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 292 GVNRLLHKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
G + L G YA+ +++ FLT VFN+T DL+ L
Sbjct: 191 GQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -3
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVIIQA*TDFYTSLVKENMP 247
P PIP QA PGQA P + P VQ + + P FPG + ++ T
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPGANVSLGSNMPTMPAGTTTV 62
Query: 246 LLRKHIRYSLP 214
++ +R +P
Sbjct: 63 NFQQQVRPQVP 73
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -3
Query: 294 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 151
Q+ +Y VKE + H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Frame = -3
Query: 501 RRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTL 331
++ + S S + P +P+VP P PP +PG A + + + V+ +
Sbjct: 2296 QKDANSSPGSNSTRSPSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPI 2355
Query: 330 PPLRLVFP 307
P RL P
Sbjct: 2356 APTRLALP 2363
>SB_1163| Best HMM Match : DMA (HMM E-Value=1.4e-11)
Length = 403
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = -3
Query: 498 RKSGSGHKSATDSHPQPIRRAPTVPAAPI--PPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
RK S + DS P P RRA T P + P RP Q A P + R P
Sbjct: 137 RKRCSSYSEEEDSAPSPKRRAST-PEVRVKEEPVDRPASPQQHSAPASPAREEKERKSTP 195
Query: 324 LR 319
+R
Sbjct: 196 VR 197
>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
Length = 944
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 513 SGWNRRKSGSGHKSATDSHPQPIRRA-PTVPAAPIPP-QARPGQAQPLQAVLLPRAVQVH 340
SG + K GS + + ++ +P ++ P+ PA+ A+P QA+PL + P + Q
Sbjct: 565 SGPSAAKPGSTKSAKSQANTRPASKSTPSGPASNNGTVAAKPSQARPLASAKRPASAQAG 624
Query: 339 R 337
R
Sbjct: 625 R 625
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -3
Query: 468 TDSHPQPIRRA-PTVP-AAPIPPQARPGQAQPLQAVLLP 358
T P P R + P VP A+P PP ARP P + + P
Sbjct: 42 TSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -3
Query: 468 TDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
T P P R P+ P P PP P + P PR + PP
Sbjct: 202 TQPPPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPP 249
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 9.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 423
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 9.1
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +1
Query: 400 CLRWNRCCW 426
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,377,626
Number of Sequences: 59808
Number of extensions: 332305
Number of successful extensions: 1093
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -