Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0293.Seq
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.78
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 3.2
AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical ... 29 3.2
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 4.2
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 4.2
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 4.2
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 4.2
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 28 5.5
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 28 5.5
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 28 5.5
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 28 5.5
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 5.5
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 28 5.5
Z93372-5|CAI70403.1| 104|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 7.3
U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical pr... 27 7.3
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 27 7.3
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 27 7.3
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 27 7.3
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 27 7.3
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical pr... 27 9.6
U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical pr... 27 9.6
U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical pr... 27 9.6
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 27 9.6
AL132895-3|CAC14400.1| 676|Caenorhabditis elegans Hypothetical ... 27 9.6
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 27 9.6
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 30.7 bits (66), Expect = 0.78
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 456 PQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
P+PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 248 PKPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -3
Query: 456 PQP-IRRAPTVPAAPIPPQARPGQAQPLQ 373
P+P +++APT AAP PP+ P QA P+Q
Sbjct: 311 PKPAVQQAPT-RAAPAPPKPAPQQAPPVQ 338
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = -3
Query: 474 SATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
S Q AP A PI Q +P Q Q QA + + V + PP
Sbjct: 30 SPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAPP 79
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Frame = -3
Query: 450 PIRRAPTVPAAPI-----PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 313
P + PTV API PP QAQ QA P A Q+ PP +V
Sbjct: 93 PAQAKPTVQQAPILVAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 441
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 3.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPPLRLVFP 307
P+P R+ + AP+ P ARP P A L L A + + P R + P
Sbjct: 725 PKPPRKKKPIAEAPLRPPARPAPIVPTSAGLSLVLAASLPTSSTPSRFLNP 775
>AC024790-1|AAK84609.1| 315|Caenorhabditis elegans Hypothetical
protein Y47D7A.3 protein.
Length = 315
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 409 WNRCCWHCRCSSYRLWMTVGSAFVTGS*FPSIP 507
W CCW +C S + + GS F + F IP
Sbjct: 102 WLLCCWIAKCGSSGVCYSNGSYFPLDTNFQPIP 134
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P P VP +PPQ RP Q P+Q P
Sbjct: 348 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P P VP +PPQ RP Q P+Q P
Sbjct: 445 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 316
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 6 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 98
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 312 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 360
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 408 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 456
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 380 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 428
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 459 HPQPIRRAPTVPAAPIPPQARPGQAQPL 376
+PQ AP P AP P A P A PL
Sbjct: 57 YPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -3
Query: 435 PTVP-AAPIPPQARPGQAQP 379
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
AT +HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 312 ATFAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 360
>Z93372-5|CAI70403.1| 104|Caenorhabditis elegans Hypothetical
protein BE10.5 protein.
Length = 104
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 477 KSATDSHPQPIRRAPTVPAAPIPPQARPGQAQ 382
K + H QP+ P P AP+ P R + Q
Sbjct: 19 KKGENRHDQPLAPQPAQPGAPLTPDRRTEKKQ 50
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -3
Query: 471 ATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPR-AVQVHRTLP 328
A + PIR +AP PP+ P +A +A+ + A +V R P
Sbjct: 382 AASASKAPIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAP 430
>U64833-1|AAB04814.1| 857|Caenorhabditis elegans Hypothetical
protein B0507.6 protein.
Length = 857
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 491 QDPVTKALPTVIHNR*DEHRQCQQHRF 411
QD + P+ IH+ D HR C +H F
Sbjct: 656 QDKLQFLQPSTIHSTSDLHRICNEHEF 682
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = -3
Query: 501 RRKSGSGHKSATDSHPQPIRR--APTVPAAPIPPQARPGQAQPLQAVLLP 358
RRKSG T S AP VPAAP+ P P+ V LP
Sbjct: 701 RRKSGQKTDQTTPSSDAEASSDPAPPVPAAPVAPVVPIVPIVPVHPVPLP 750
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Frame = -3
Query: 501 RRKSGSGHKSATDSHPQPIRR--APTVPAAPIPPQARPGQAQPLQAVLLP 358
RRKSG T S AP VPAAP+ P P+ V LP
Sbjct: 701 RRKSGQKTDQTTPSSDAEASSDPAPPVPAAPVAPVVPIVPIVPVHPVPLP 750
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -3
Query: 450 PIRRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 328
P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 267 PSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
PQP ++P + A P PP P Q P QA
Sbjct: 72 PQPYAQSP-IAAVPPPPPPPPPQPAPAQA 99
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
H S P+P P AP+PP+ PG P
Sbjct: 759 HPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP 792
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
H S P+P P AP+PP+ PG P
Sbjct: 759 HPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP 792
>Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical
protein K03A11.5 protein.
Length = 149
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 314 CFQESSFRREQTFTQAWSRKICLCFENIFDIPYHLRKNI 198
C Q RE F+ A C+C N D PY + KN+
Sbjct: 15 CNQLKCKNREPDFSNA--NTTCVCHHNPSDYPYDICKNL 51
>U23515-9|AAP82644.1| 360|Caenorhabditis elegans Hypothetical
protein R144.4a protein.
Length = 360
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -3
Query: 492 SGSGHKSATDSHPQPIRRAP--TVPAA-PIPPQARPGQAQP 379
S H AT S P P P +VP++ P PP P Q +P
Sbjct: 143 SSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKP 183
>U23515-8|AAP82645.1| 362|Caenorhabditis elegans Hypothetical
protein R144.4b protein.
Length = 362
Score = 27.1 bits (57), Expect = 9.6
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -3
Query: 492 SGSGHKSATDSHPQPIRRAP--TVPAA-PIPPQARPGQAQP 379
S H AT S P P P +VP++ P PP P Q +P
Sbjct: 143 SSFSHHGATSSAPPPPPPPPPVSVPSSKPTPPPPPPAQQKP 183
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
H S P+P P AP+PP+ PG P
Sbjct: 759 HPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP 792
>AL132895-3|CAC14400.1| 676|Caenorhabditis elegans Hypothetical
protein Y59A8A.3 protein.
Length = 676
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 498 RKSGSGHKSATDSHPQPIRRAPTVPAAPIP 409
+K K A D+ P P AP P AP P
Sbjct: 65 KKQQQTGKKAQDAAPAPASAAPAAPNAPTP 94
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -3
Query: 480 HKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
H S P+P P AP+PP+ PG P
Sbjct: 759 HPSGPSPVPRPAPAPPGGRQAPMPPRGGPGAPPP 792
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,096,472
Number of Sequences: 27780
Number of extensions: 253120
Number of successful extensions: 943
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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