Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0293.Seq
(578 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 30 0.97
At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family... 30 0.97
At4g40020.1 68417.m05666 hypothetical protein 30 1.3
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 2.2
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 29 2.2
At1g13050.1 68414.m01513 expressed protein 29 2.2
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 3.0
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 28 3.9
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 5.2
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 28 5.2
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 6.8
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 27 6.8
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 6.8
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 27 9.0
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ... 27 9.0
At1g26150.1 68414.m03192 protein kinase family protein similar t... 27 9.0
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 498 RKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
R S + SA + P P R+ T P+PP++ P A P+ + LP
Sbjct: 1388 RHFASAYASARLALPAPEERSLTSATIPVPPESYPPVAIPMIELPLP 1434
>At1g73840.1 68414.m08549 hydroxyproline-rich glycoprotein family
protein similar to proline-rich protein precursor
GB:AAC34889 [Glycine max]
Length = 388
Score = 30.3 bits (65), Expect = 0.97
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = -3
Query: 489 GSGHKSATDSHPQ-PIRRAPTVPAAPIPP-----QARPGQAQP 379
GS H+ A PQ PIR+ PT P+PP A Q+QP
Sbjct: 107 GSVHEPANTMQPQAPIRKHPTPQPMPMPPPPPSVSANSAQSQP 149
>At4g40020.1 68417.m05666 hypothetical protein
Length = 615
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 501 RRKSGS-GHK--SATDSHPQPIRRAPTVPAAPIPPQA 400
RRKS S HK S+TDS + + PT P+ P+PP +
Sbjct: 576 RRKSLSFSHKKESSTDSQDKQQPQTPTSPSPPLPPMS 612
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 501 RRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPL 376
+R SGS + P P R P P A P P +A+PL
Sbjct: 529 KRASGSRGRRPRPPLPPPARARPLPPPARARPMPPPARARPL 570
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -3
Query: 456 PQPIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
P PI + P V P P PP+ +P + P V +T PPL
Sbjct: 219 PVPIYKPPVVIPKKPCPPKIHKPIYKPPVPIYKPPVVIPKKTFPPL 264
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 459 HPQPIRRA-PTVPAAPIPPQARPGQAQPLQ 373
H P R P P P+PP+ P A+PLQ
Sbjct: 65 HESPSSRPLPLRPEEPLPPRHNPNSARPLQ 94
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 456 PQPIRRAPTVPAAPIPPQARPG-QAQPLQAVLLPRAVQVHRTLPPLRLVFPG 304
P P R +P P PP P A+ L P V+ LPP L+F G
Sbjct: 58 PPPAMRRRVLPRPPPPPPPLPMFDAEVLCCCYPPTRVRREAPLPPPPLIFVG 109
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -3
Query: 498 RKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQV--HRTLPP 325
++ G + HPQ + P +P +PP + PL LPR +Q+ H +PP
Sbjct: 567 QQQGYQQQQQHQGHPQQMLPMPNMPHHQLPPSSH----MPLHPHHLPRPMQMPPHGHMPP 622
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = -3
Query: 450 PIRRAPTVPAAPIPPQAR------PGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P+ +P P P+PP P + A++LPR+ + H T P L L
Sbjct: 54 PLESSPPSPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLL 104
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 27.9 bits (59), Expect = 5.2
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Frame = -3
Query: 516 VSGWNRRKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVL----LPRAV 349
++GWNRR + GH++ S P A + + ++ A++ P
Sbjct: 38 ITGWNRRSTSLGHRAFFCSEPTNGEAAAEAETKAVESDSEVSDSKSSSAIVPTNPRPEDC 97
Query: 348 QVHRTLP-PLRLVFPG 304
LP P R +FPG
Sbjct: 98 LTVLALPVPHRPLFPG 113
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 474 SATDSHPQPIRRAPTVPAAPIP--PQARPGQAQP 379
+++ + P P++ PT P+AP P P P Q+ P
Sbjct: 16 NSSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPP 49
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -3
Query: 459 HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 331
HPQ ++P +P+ P+++ L+ + V+ HR L
Sbjct: 50 HPQSPPEPKSLPLSPLSPKSKEEPESQTMTPLMSKHVKTHRNL 92
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -3
Query: 474 SATDSHPQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
++T + P P AP AAP P P AQP + + P V T PP V P
Sbjct: 33 TSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPA-VTPTSPPAPKVAP 89
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 144 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFP 260
+L+HY+ +VL++D L + + N+E V A FP
Sbjct: 683 SLRHYRLTENDQFMVLSSDGLYQYLSNVEVVSLAMEKFP 721
>At2g07360.1 68415.m00843 SH3 domain-containing protein contains Pfam
profile PF00018: SH3 domain
Length = 1196
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 498 RKSGSGHKSATDSHPQPIRRAPTVPAAPIPPQARPGQAQPL 376
+ GS ++S + + PIR P P + PQ+R P+
Sbjct: 1075 KSGGSKYQSTYEGYGSPIREEPPPPYSYSEPQSRESFENPV 1115
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = -3
Query: 483 GHKSATDSHPQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
G K T S P P + P P+ P PP+ +P L + LPP +V P
Sbjct: 235 GSKRPTPSPPSPSDSKRPVHPSPPSPPEETLPPPKPSPDPLPSNSSSPPTLLPPSSVVSP 294
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,243,102
Number of Sequences: 28952
Number of extensions: 229528
Number of successful extensions: 762
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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