Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0291.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    28   0.79 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   4.2  
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2...    25   5.6  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.3  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    25   9.7  

>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 108 INDIRNSRQTVDRVSNSNRSRTLVEAFKSRATRNRGPALCSPSL 239
           +N IR  R+     S S+ SRT +      +  +RGP L +P+L
Sbjct: 163 LNGIRERRERSISPSFSHHSRTSISGQSHSSRSSRGPLLNAPTL 206


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = -2

Query: 373 APSPVPDCWPG*GCSGPRRPFSCSTCHAASHPRRVSVSREVFVHR 239
           AP+P P+  P      P +P   +   A   P  +S S   F H+
Sbjct: 299 APAPAPESEPSKPSIAPSQPSKTNVSAAYEKPAELSSSSVPFPHK 343


>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 509 EAXSQAAPSQLXCSKSLVRLRFYCGA 432
           EA +  A S    SK L RLR+YC A
Sbjct: 5   EAGTPKAISNALKSKGLQRLRWYCSA 30


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 93  PVSININDIRNSRQTVDRVSNSNRSRTLVEAFKSR 197
           P S N +  RNS  +++RV N+N +        SR
Sbjct: 10  PTSSNSSANRNSNNSMNRVENNNSNSDSANTVDSR 44


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 2/20 (10%)
 Frame = -2

Query: 334 CSGPRR--PFSCSTCHAASH 281
           CS PR+  P  C TCH  +H
Sbjct: 140 CSEPRKRGPRVCRTCHTDTH 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,632
Number of Sequences: 5004
Number of extensions: 36351
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)