Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0291.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 33 0.11
05_03_0283 + 11597128-11597467,11598033-11598046 31 0.80
09_06_0281 + 22014394-22015534,22016041-22017056 29 3.2
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 4.3
12_02_0440 - 19109807-19110132,19110219-19110291,19110444-191105... 28 5.6
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173... 28 5.6
02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814 27 7.5
02_05_0354 - 28245422-28245844 27 7.5
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 27 9.9
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 33.5 bits (73), Expect = 0.11
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 304 NTKMAFED-RCSPSQANSPGPVTGRSPRAVRXDPXIQPAEPSTLAPQ*NRS 453
N + +FE R SP+ + PV R+P P QP+ P PQ +S
Sbjct: 153 NQRSSFEQHRTSPAAVSKIAPVVSRTPTQAPHQPKAQPSVPKVSPPQPEKS 203
>05_03_0283 + 11597128-11597467,11598033-11598046
Length = 117
Score = 30.7 bits (66), Expect = 0.80
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 202 HGTGDPHCALRPYDEQTPHG 261
HG GDPHCAL TP G
Sbjct: 19 HGAGDPHCALHLQVRATPAG 38
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +1
Query: 274 VAGGSLRDRWNTKMAFEDRCSPSQANSPGPVTGRSPRAVRXDPXI 408
VAGG +D K+A RC N+PG R PR R DP I
Sbjct: 330 VAGGC-QDIDECKLA--GRCYGECTNTPGDYQCRCPRGARGDPRI 371
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 305 TRKWPSRTAAALARPTVRDR*RGEVXAPYAETLAYNPQSQVHLHHNRIEVERGSSNXTIV 484
T+ +P + A + P + G P A+ LA PQS R+ VER N I+
Sbjct: 1173 TKAFPQKFATPIGLPNGEQK-HGYETPPPAKYLASLPQSLTRSRRTRMPVERQEENHEIL 1231
>12_02_0440 -
19109807-19110132,19110219-19110291,19110444-19110586,
19110787-19111002,19111072-19111387,19111474-19111884,
19113979-19114005
Length = 503
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 390 YGAXTSPRHRSRTVGLARAAAVLEGH 313
+G +PRH S G + VLEGH
Sbjct: 12 WGREKTPRHASTQTGAEKVTEVLEGH 37
>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
32917396-32917552,32917695-32917753,32918180-32918291,
32918901-32919050,32919180-32919316,32919977-32920123,
32920197-32920298,32920674-32920731,32920840-32920941,
32921905-32921942,32922031-32922157,32922228-32922401,
32922542-32922628,32923838-32923947,32924654-32924714,
32925338-32925515,32925628-32925833,32926108-32926227,
32927202-32927423,32927708-32927847,32927976-32928087,
32928254-32928304,32928384-32928473,32928630-32928800,
32928897-32929049,32929860-32930036,32930131-32930268,
32930363-32930433,32930837-32930936,32931156-32931212,
32931301-32931357,32931451-32931531,32931614-32931696,
32931831-32931966
Length = 1459
Score = 27.9 bits (59), Expect = 5.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 305 TRKWPSRTAAALARPTVRDR*RGEVXAPYAETLAYNPQSQVHLHHNRIEVERGSSNXTIV 484
T+ +P + A + P + G P A+ LA PQS R+ VER N I+
Sbjct: 1000 TKAFPQKFATPIGLPNGEQK-HGYETPPAAKYLASLPQSLTGSRRTRMPVERQEENHEIL 1058
>02_05_1256 - 35281926-35282635,35282711-35283112,35283508-35283814
Length = 472
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -3
Query: 369 RHRSRTVGLARAAAVLEGHFRVPPVTQRATRDASLSAVRCLFIVRTE 229
R R + AA VL+ H P T RA A RCL VR E
Sbjct: 369 RWAMRKLAEGAAADVLDPHLPRTPATARAAEMVMELAFRCLAPVRQE 415
>02_05_0354 - 28245422-28245844
Length = 140
Score = 27.5 bits (58), Expect = 7.5
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +1
Query: 202 HGTGDPHCAL 231
HG GDPHCAL
Sbjct: 19 HGAGDPHCAL 28
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 326 TAAALARPTVRDR*RGEVXAPYAETLAYNPQSQVHLHHNRIEVE 457
T+AAL RP D R EV P + ++ S V HHN VE
Sbjct: 173 TSAALVRPPCGDDVRVEVFLPSGD-ISICQISMVDFHHNIALVE 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,998,143
Number of Sequences: 37544
Number of extensions: 321233
Number of successful extensions: 1056
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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