Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0291.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.5  
SB_58858| Best HMM Match : zf-CXXC (HMM E-Value=7.2)                   28   4.4  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   27   7.6  
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)                  27   7.6  
SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)                       27   7.6  

>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +1

Query: 268  RRVAGGSLRDRWNTKMAFEDRCSPSQANSPGPVTGRSPRAVRXDPXIQPAEPSTLAPQ 441
            ++VAGG+  + WNT     +R  P Q ++     G+ P+AV     I P + +    Q
Sbjct: 1889 QQVAGGNWNE-WNTNSKTSNREGPQQTHTTPSRMGQPPQAVDQSMVIAPRQQAPSVSQ 1945


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 4    SRARRLHDEKKKKTSVVRRVERQRIHANEPPY 99
            S+  +LH+    + S VR   R RI +++PPY
Sbjct: 1099 SKEYKLHNPSDFEDSPVRETRRTRIRSDDPPY 1130


>SB_58858| Best HMM Match : zf-CXXC (HMM E-Value=7.2)
          Length = 168

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 23/94 (24%), Positives = 39/94 (41%)
 Frame = +1

Query: 265 QRRVAGGSLRDRWNTKMAFEDRCSPSQANSPGPVTGRSPRAVRXDPXIQPAEPSTLAPQ* 444
           +R+++      RW+TKM    R +  +    G  +G+  R  + +     ++  T     
Sbjct: 48  ERKISRRLKLTRWDTKMERRHRGAEEKGTQGGVGSGKDNRITKEEHGKLDSDKQTFIVGF 107

Query: 445 NRSRTRLFEHXNCEGAA*LXASXPGXGPERXGIP 546
                RL  + + EGA    A  PG GP   G+P
Sbjct: 108 GYLTYRLMTYQS-EGAFAPLAPPPGYGP--GGVP 138


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 43   TSVVRRVERQRIHANEPPYR 102
            T  ++ VE QR HA E PYR
Sbjct: 1046 TKALKAVEHQRTHAGEKPYR 1065


>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 302 GTRKWPSRTAAALARPTVRDR*RGEVXAPY 391
           G+R+   RT A +A P VRDR    +  PY
Sbjct: 85  GSRRRKRRTTATIANPVVRDRCHRFLNYPY 114


>SB_22100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 328 RCSPSQANSPGPVTGRSPRAVRXDPXIQPAEPST 429
           RCSP  + +    T  SPR +  D    P++P +
Sbjct: 493 RCSPGPSGTISASTSGSPRTLNQDSPPSPSQPES 526


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 NRIEVERGSSNXTIVKVQPDXPLPXRDXVQN 532
           ++I  ++GS + T++  +P  PLP  D + N
Sbjct: 303 SQIMSQKGSGSPTVITNKPQEPLPPTDVIVN 333


>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
          Length = 1284

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   RARRLHDEKKKKTSVVRRVERQRIHANE 90
           + R LH+EK++K  + +++E      NE
Sbjct: 589 KTRNLHEEKRRKEELEKKIEEMETSKNE 616


>SB_4715| Best HMM Match : FlpD (HMM E-Value=1.1)
          Length = 705

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 328 RCSPSQANSPGPVTGRSPRAVRXDPXIQPAEPST 429
           RCSP  + +    T  SPR +  D    P++P +
Sbjct: 581 RCSPGPSGTISASTSGSPRTLNQDSPPSPSQPES 614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,041
Number of Sequences: 59808
Number of extensions: 328453
Number of successful extensions: 1021
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)