Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0291.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    32   0.24 
U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved olig...    28   3.9  
AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z50756-1|CAA90637.2|  737|Caenorhabditis elegans Hypothetical pr...    27   6.7  
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    27   6.7  
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    27   6.7  

>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = -1

Query: 539  PSRSGPXPGLEAXSQAAPSQLXCSKSLVRLRFYCGASVLGSAGCMXGSXRTARGLRPVTG 360
            PS   P     + S + P+   C KS +  RF C +SV G            RG RPV G
Sbjct: 1476 PSTGTPVQCSNSGSNSCPAGYKCQKSTLSNRFQCCSSVSGGGDGEEEETAPVRG-RPVVG 1534


>U80437-19|AAB37630.2|  580|Caenorhabditis elegans Conserved
           oligomeric golgi (cog)component protein 5 protein.
          Length = 580

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +1

Query: 322 EDRCSPSQANSPGPVTGRSPRAVRXD--PXIQPAEPSTLAPQ 441
           +   SPS+ +   P  GR+PR  + D  P  +P   + +AP+
Sbjct: 92  QSEVSPSKQSEASPRKGRTPRKEKKDVEPEAEPEPEADIAPE 133


>AF043698-2|AAB97559.3|  700|Caenorhabditis elegans Hypothetical
           protein C54G6.2 protein.
          Length = 700

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 398 TLAYNPQSQVHLHH-NRIEVER 460
           TLA+N +  VHLH+ NRIEV R
Sbjct: 466 TLAHNSRRVVHLHYINRIEVLR 487


>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical protein
            T08A11.2 protein.
          Length = 1322

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 251  VCSS*GRRAQCGSPVPCGARFKCLH*CPRPIRIRNAVDCLTRVSNVINI 105
            +CSS GRRA+   P  CG     L+     +R + A D + R++ V+++
Sbjct: 935  ICSSLGRRAKAYIPQICGTILWRLNNKSAKVR-QQAADLIARIAPVMHM 982


>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
            protein T08A11.2 protein.
          Length = 1322

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 251  VCSS*GRRAQCGSPVPCGARFKCLH*CPRPIRIRNAVDCLTRVSNVINI 105
            +CSS GRRA+   P  CG     L+     +R + A D + R++ V+++
Sbjct: 935  ICSSLGRRAKAYIPQICGTILWRLNNKSAKVR-QQAADLIARIAPVMHM 982


>Z50756-1|CAA90637.2|  737|Caenorhabditis elegans Hypothetical
           protein T08D10.2 protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
 Frame = +2

Query: 416 QSQVHLHHNR--IEVERGSSNXTIVKV-QPD 499
           + +V +HHN+  IE++ GSS+  I+K+ +PD
Sbjct: 468 ERKVKIHHNQRVIEIDTGSSDAVILKLRKPD 498


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -2

Query: 334 CSGPRRPFSCSTCHAASHPRRVSVSREVFVHRKDGEHNAGPRFRVARDLNASTN 173
           C  P    S S+C    +   +  +   F   K    N+ P FR+   + A+ N
Sbjct: 218 CMSPSSSSSASSCDTLDYDDLIVQTPSTFSSEKKSRSNSPPIFRIWNTIKATIN 271


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/54 (24%), Positives = 21/54 (38%)
 Frame = -2

Query: 334 CSGPRRPFSCSTCHAASHPRRVSVSREVFVHRKDGEHNAGPRFRVARDLNASTN 173
           C  P    S S+C    +   +  +   F   K    N+ P FR+   + A+ N
Sbjct: 237 CMSPSSSSSASSCDTLDYDDLIVQTPSTFSSEKKSRSNSPPIFRIWNTIKATIN 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,735,425
Number of Sequences: 27780
Number of extensions: 234194
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)