Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0291.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   4.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   4.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   4.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   4.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 291 QRATRDASLSAVRCLFIVRTESTMRVPG-SVWRAI 190
           Q+   D ++S     F+V   + + +PG S+W  +
Sbjct: 345 QKPVADVAVSGPGLAFLVYPSAVLELPGSSIWSCL 379


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 PRPIRIRNAVDCLTRVS 120
           P PIR+   +D + R++
Sbjct: 453 PHPIRVAKTIDVIARIT 469


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 PRPIRIRNAVDCLTRVS 120
           P PIR+   +D + R++
Sbjct: 439 PHPIRVAKTIDVIARIT 455


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 PRPIRIRNAVDCLTRVS 120
           P PIR+   +D + R++
Sbjct: 473 PHPIRVAKTIDVIARIT 489


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 170 PRPIRIRNAVDCLTRVS 120
           P PIR+   +D + R++
Sbjct: 422 PHPIRVAKTIDVIARIT 438


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 325 DRCSPSQANSPGP 363
           DR SPS + SP P
Sbjct: 34  DRRSPSSSRSPSP 46


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 2   CHAPGVY 22
           CH+PGVY
Sbjct: 299 CHSPGVY 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,724
Number of Sequences: 438
Number of extensions: 3324
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)