Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9SZ66 Cluster: Putative disease resistance protein; n=...    42   0.008
UniRef50_Q0B1F6 Cluster: Amino acid adenylation domain; n=2; Bac...    33   6.7  
UniRef50_Q751I8 Cluster: AGL282Wp; n=1; Eremothecium gossypii|Re...    32   8.9  

>UniRef50_Q9SZ66 Cluster: Putative disease resistance protein; n=2;
           Arabidopsis thaliana|Rep: Putative disease resistance
           protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1219

 Score = 42.3 bits (95), Expect = 0.008
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
 Frame = -1

Query: 430 EIENLGIKVFQYSLRPGLSVVLGTALNDNKDLSGAFNKLRDPATLAYILTQTESKYLKLQ 251
           ++E +GI+  ++  R G        L D++D+     +      +  I   T SK   ++
Sbjct: 497 KVETIGIRDCRWLSRHGNQCQWHIRLWDSEDICDLLTEGLGTDKIRGIFLDT-SKLRAMR 555

Query: 250 FRSNFR*EIHVIMYLKLKGS-CKRGCRA--RLHLRQALFLLDSRPIQYTSFHWHYYDL 86
             +     ++ + YLK+  S C RGC A  +LHLR+ L  L   P + T  HWH Y L
Sbjct: 556 LSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFL---PNELTYLHWHGYPL 610


>UniRef50_Q0B1F6 Cluster: Amino acid adenylation domain; n=2;
           Bacteria|Rep: Amino acid adenylation domain -
           Burkholderia cepacia (strain ATCC 53795 / AMMD)
          Length = 3018

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = -1

Query: 181 GCRARLHLRQALF------LLDSRPIQYTSFHWHYYDLSIKII 71
           GCR    L  ALF      L+D  P+  TSFHW  +D  ++++
Sbjct: 19  GCRITGSLDPALFHAAWQQLVDRHPVMRTSFHWEEFDKPMQVV 61


>UniRef50_Q751I8 Cluster: AGL282Wp; n=1; Eremothecium gossypii|Rep:
           AGL282Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 214

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 27/89 (30%), Positives = 45/89 (50%)
 Frame = +2

Query: 248 ELQLQVFRLGLSQDIRQRRGIAEFVKCAAKILVVI*CSPQDDGKTRSQRILEDLDAKIFD 427
           E+Q+QV  LGLS++       A   KC  K L++   SP D G+T        L+A+ F 
Sbjct: 59  EMQIQVILLGLSEE------PASDFKCKDKFLLITLPSPYDLGETTVAEAWPQLEAE-FK 111

Query: 428 FRVFSRTLRVPCLFITLCSASAVNEMSSA 514
            +  S+ ++V  L  +    ++V E ++A
Sbjct: 112 QQAVSKKIKVKYLLDSEPRDTSVAETATA 140


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,693,357
Number of Sequences: 1657284
Number of extensions: 10927731
Number of successful extensions: 26855
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26852
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)