Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    24   0.85 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   6.0  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = +3

Query: 333 LRSLLSFN----AVPKTTERPGLKEYW 401
           +R  LSFN     VP+T ++PG   +W
Sbjct: 188 IRHSLSFNDCFVKVPRTPDKPGKGSFW 214


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 360  VPKTTERPGLKEYWKTLMPRFSISAYF 440
            +P T+E+P L E  K     F I  YF
Sbjct: 1378 IPPTSEKPPLPEELKPQSGYFKIVCYF 1404



 Score = 23.0 bits (47), Expect = 2.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 463  AWYSEGAGKY 434
            AWY +G GKY
Sbjct: 1833 AWYRQGVGKY 1842



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 463  AWYSEGAGKY 434
            AWY +G GKY
Sbjct: 1408 AWYRKGLGKY 1417



 Score = 22.2 bits (45), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 463  AWYSEGAGKY 434
            AWY +G GKY
Sbjct: 2331 AWYRQGDGKY 2340


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = -1

Query: 580 FSQLTLTFISHGXKLATHTARTSRRHFIHSTSGTQSNKQAWYSEGAGKYAEI 425
           +S L L  ++   +   + A   R     S   TQ+  + W+     KY ++
Sbjct: 128 YSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKM 179


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,070
Number of Sequences: 336
Number of extensions: 2852
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)