Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0289.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...    28   1.2  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   3.6  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   4.8  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   4.8  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    26   4.8  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    26   4.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.4  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    25   8.4  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/41 (31%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = -2

Query: 489 LAEHKVINKHGTR-RVRENTRKSKILASRSSSIL*DLVFPS 370
           +A+ +++ K G + RV +   +S+ L +  ++IL D+VFP+
Sbjct: 95  IAQRRILPKPGRKSRVTQKRPRSRTLTAVHNAILEDIVFPT 135


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 451 EGAGKYAEIENLGIKVFQYSLRPGLSVVLGTALNDNKDLSGAFNKLRDPATLAYILTQTE 272
           EG+GK      L  + F+YSL     V +  A  D K +     ++++P+T   +L +  
Sbjct: 498 EGSGKLLLNVRL-CQDFEYSLAGKKDVKVPAASTDGKSIEMYLIRVKEPSTAEKLLAELN 556

Query: 271 SK 266
            K
Sbjct: 557 EK 558


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 20  QSKHFES*THNFIIHLYDDLYTQ 88
           QSK++ES    +++HL D++ T+
Sbjct: 418 QSKNYESFVWKYVLHLTDEMSTE 440


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 235 GNSTGTAASSI*TRFESRYTP 297
           GN TGT+A+S+   F+ R TP
Sbjct: 356 GNITGTSATSLEELFKERVTP 376


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -1

Query: 448 GAGKYAEIENLGIKVFQYSLRPGLSVVLGTALN-DNK 341
           G   Y E+ N+ I++F+Y  +P   +VL + L  +NK
Sbjct: 545 GKAVYVELRNVPIEIFEYYNKPWNLLVLYSLLQYENK 581


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 248 PVEFPLRDSRDYVPEIKRKL 189
           PVE  +R +RD++ EIK K+
Sbjct: 143 PVEADIRRARDFIEEIKGKI 162


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 333 LRSLLSFNAVPKTTERPGLK--EYWKTLMPRFSISAYFPAPSE 455
           L SLLSF       E+   +  E+W TL+  FS+S     PS+
Sbjct: 358 LASLLSFPGYAIVEEKVSWRTLEFWTTLIEDFSMSKAATDPSK 400


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 121 ELVENQEEIGLVEDEV 168
           E+ EN+ EI +VEDE+
Sbjct: 26  EIPENEREISIVEDEI 41


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 427 FPRIFPHPPSTML 465
           +P+IFPH PS +L
Sbjct: 279 YPKIFPHSPSDLL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,476
Number of Sequences: 5004
Number of extensions: 46245
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)